PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G03860.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 420aa    MW: 44177.6 Da    PI: 10.6933
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G03860.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.78.7e-15157189133
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                      C nC + +Tp+WR+gp g +tLCnaCG++ r  
  ONIVA12G03860.2 157 CLNCDAVETPQWRSGPMGRSTLCNACGVRLRAV 189
                      99**************************99865 PP
2GATA56.83.1e-18285319135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+t+Tp+WR+gp g  tLCnaCG++yr  +l
  ONIVA12G03860.2 285 CVHCGSTETPQWREGPTGRGTLCNACGVRYRQGRL 319
                      *******************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012178.6E-148496No hitNo description
PRINTSPR012178.6E-14103119No hitNo description
SuperFamilySSF577161.66E-12150192No hitNo description
PROSITE profilePS5011412.097151190IPR000679Zinc finger, GATA-type
SMARTSM004015.0E-12151202IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-13155189IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.84E-10156190No hitNo description
PROSITE patternPS003440157182IPR000679Zinc finger, GATA-type
PfamPF003203.9E-12157188IPR000679Zinc finger, GATA-type
PRINTSPR012178.6E-14207223No hitNo description
PRINTSPR012178.6E-14226243No hitNo description
PRINTSPR012178.6E-14254279No hitNo description
SMARTSM004013.1E-16279329IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.716279315IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-14281341No hitNo description
Gene3DG3DSA:3.30.50.109.3E-15283317IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.64E-15284341No hitNo description
PfamPF003204.7E-16285319IPR000679Zinc finger, GATA-type
PROSITE patternPS003440285310IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MATVEGGIGE HFVAEQPPGL ARERRPRLRR SVAATGDMDG DGDVGGGGGG GGGGGVRYVL  60
ALPAMASLAV LIAHLDAAVP VPRRPRSYLP RAVPMAWWAF RLPVFRPPPP PPPPPAKNPV  120
KEEEGVARVV VVVAPPPPVD PGEEEAGKRA AKRARRCLNC DAVETPQWRS GPMGRSTLCN  180
ACGVRLRAVG SLPEHRAPAA RTTTAAPASP PDSPIWTPGH KPPSSSPDIY LVRRTPKLPV  240
TRPPRTKQAP PTAPAPAPPP PPPQPASPKT KTKAKAKKPK RKRSCVHCGS TETPQWREGP  300
TGRGTLCNAC GVRYRQGRLL PEYRPKGSPT FSPSVHAANH RQVLELRRQQ RQSTNPSTPP  360
PPPVSAAEPI PDEQKEEVVS VPVAAAAPAT DGGAASSLDA LLLDGPSAPL IVDGDDFLVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9548250.0AL954825.3 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620068.10.0vegetative cell wall protein gp1
TrEMBLA0A0E0J7900.0A0A0E0J790_ORYNI; Uncharacterized protein
STRINGONIVA12G03860.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.24e-23GATA transcription factor 11