PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G01160.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 395aa    MW: 43747.9 Da    PI: 9.1777
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G01160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.58.8e-52191601128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtd e++  yL +k+ + +++    i evd++k+ePwdLp+k+k +ekewyfFs++d ky+tg r+nratk+gyWkatgkd+e+++
  ONIVA12G01160.1  19 LPPGFRFHPTDAEVILSYLLQKLLNPSFTS-LPIGEVDLNKCEPWDLPSKAKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFR 111
                      79*************************888.56***************99999***************************************** PP

              NAM  95 k...............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +               k++lvg+kktLvfy grapkg+kt+Wvmhe+rl
  ONIVA12G01160.1 112 QpaavntssyggssnkKKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRL 160
                      99999888888887766667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-5916187IPR003441NAC domain
PROSITE profilePS5100553.73319187IPR003441NAC domain
PfamPF023651.6E-2520160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MVESTTSLVK LEQDGGLFLP PGFRFHPTDA EVILSYLLQK LLNPSFTSLP IGEVDLNKCE  60
PWDLPSKAKM GEKEWYFFSH KDMKYPTGMR TNRATKEGYW KATGKDREIF RQPAAVNTSS  120
YGGSSNKKKQ LVGMKKTLVF YMGRAPKGTK TNWVMHEFRL HANLHNHHPN LRLNPKDEWV  180
VCKVFHKKQG DEAINNQQQQ PQYAAVDQYS AETPNSGSSV VQAGDIDGGD DFFQLDDIID  240
PSIYFVSNSS NILSAPPNNN NAVYSVSAST TTTNTTAVSF QQQPNYYSLI NKSSSSSSNY  300
SAPLQQHVSS WNNTPGAGGA HGIGSSYYNL QQQQAAMVKA LENVIAVPNF GTLLPSSNKL  360
KGLSKSAMAG VTQQNPLGVP QYKIENYGDH YISRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-501718815166NO APICAL MERISTEM PROTEIN
1ut4_B7e-501718815166NO APICAL MERISTEM PROTEIN
1ut7_A7e-501718815166NO APICAL MERISTEM PROTEIN
1ut7_B7e-501718815166NO APICAL MERISTEM PROTEIN
3swm_A6e-501718818169NAC domain-containing protein 19
3swm_B6e-501718818169NAC domain-containing protein 19
3swm_C6e-501718818169NAC domain-containing protein 19
3swm_D6e-501718818169NAC domain-containing protein 19
3swp_A6e-501718818169NAC domain-containing protein 19
3swp_B6e-501718818169NAC domain-containing protein 19
3swp_C6e-501718818169NAC domain-containing protein 19
3swp_D6e-501718818169NAC domain-containing protein 19
4dul_A7e-501718815166NAC domain-containing protein 19
4dul_B7e-501718815166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1822780.0AB182278.1 Oryza sativa Japonica Group mRNA for ONAC300, complete cds.
GenBankAK2876660.0AK287666.1 Oryza sativa Japonica Group cDNA, clone: J065117E22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620530.10.0NAC domain-containing protein 77
SwissprotQ5CD170.0NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A0E0J6650.0A0A0E0J665_ORYNI; Uncharacterized protein
STRINGONIVA12G01160.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.26e-71Arabidopsis NAC domain containing protein 87