PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G01150.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 367aa    MW: 40695.4 Da    PI: 7.5922
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G01150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.93.6e-315012653128
              NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls+ ++ ++g+kk Lvfykg+ pkg+ktdW+mheyrl
  ONIVA12G01150.1  50 FGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSILSTpTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRL 126
                      4789*************************************9988899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.2851161IPR003441NAC domain
PfamPF023653.2E-1545126IPR003441NAC domain
SuperFamilySSF1019411.96E-3845161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MPAWMQPAVT FVTEAVIALV AKTMFLLGQD DVSHGNIRAP STRIRRKALF GENEWYFFSP  60
RDRKYPNGAR PNRAAGSGYW KATGTDKSIL STPTSDNIGV KKALVFYKGK PPKGVKTDWI  120
MHEYRLTGTS ANNTTTTTKQ RRASSMTMRL DDWVLCRIHK KSNDFNSSDQ HDQEPEGSTV  180
DEQLEDIHDN NSSSQQPPAP PDMNNQQSDF QPMTAMSMSK SCSLTDLLNN LDCAALSQFL  240
LDGSSDAIAE LPAPPSPLIY PNQTLNYNIN NNMPHAFESR LDHHDGYVNN YNVNGLRRKR  300
MMACSATSFD DGSSSSSDFL HVAKKPLLLP SDSRGSGFGG GYCNQQLSET ATGFQFQNGN  360
MLSRPFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-464716368170NAC domain-containing protein 19
3swm_B3e-464716368170NAC domain-containing protein 19
3swm_C3e-464716368170NAC domain-containing protein 19
3swm_D3e-464716368170NAC domain-containing protein 19
3swp_A3e-464716368170NAC domain-containing protein 19
3swp_B3e-464716368170NAC domain-containing protein 19
3swp_C3e-464716368170NAC domain-containing protein 19
3swp_D3e-464716368170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0004950.0BX000495.1 Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620532.10.0NAC transcription factor 29
TrEMBLA0A0E0J6640.0A0A0E0J664_ORYNI; Uncharacterized protein
STRINGONIVA12G01150.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.13e-53NAC domain containing protein 47