PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G16660.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 436aa    MW: 48617.4 Da    PI: 9.0378
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G16660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.87.8e-23186229245
              WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       ep+rCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  ONIVA11G16660.1 186 VEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVEG 229
                      59***************************************996 PP
2QLQ582.8e-20133169137
              QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      ++FT++Q+++L++Q+l+yK++aan+ vP+ Ll++i++
  ONIVA11G16660.1 133 GPFTPTQWMELEHQALIYKHIAANVSVPSSLLLPIRR 169
                      59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.4E-12133169IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-14134168IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.888134169IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.136185229IPR014977WRC domain
PfamPF088793.9E-19187228IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAMEIQEACK KNTMADVVSS KVEEEEEGKS KSKMGKGIPT ISIFFIISWI HKLFLFWRRR  60
RRADVELLLP QWNSRKPYTT CSWASLASGL FALLDFSSEY FIICAHQFCL CCDEGLGLSS  120
GGSMQGVLAR VRGPFTPTQW MELEHQALIY KHIAANVSVP SSLLLPIRRS LHPWGWGSFP  180
PGCADVEPRR CRRTDGKKWR CSRDAVGDQK YCERHINRGR HRSRKHVEGR KATLTIAEPS  240
MVIAAGVSSR GHTVARQKQV KGSAATISDP FSRQSNRKFL EKQNVVDQLS PMDSFDFSST  300
QSSPNYDNVA LSPLKLHHDH DESYIGHGAG SSSEKGSMMH ESRLTVSKET LDDGPLGEVF  360
KRKNCQSAST EILTEKWTEN PNLHCPSGIL QMATKFNSIS SGNTVNSGGT AVENLITDNG  420
YLTARMMNPH IVPTLL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1030550.0AK103055.1 Oryza sativa Japonica Group cDNA clone:J033117J15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615703.10.0growth-regulating factor 8
SwissprotQ6AWY10.0GRF8_ORYSJ; Growth-regulating factor 8
TrEMBLA0A0E0J3640.0A0A0E0J364_ORYNI; Uncharacterized protein
STRINGONIVA11G16660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129602731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-37growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]