PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G14160.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 289aa    MW: 31941.5 Da    PI: 8.8512
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G14160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.43.7e-29251468128
              NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                      hPt+ elv +yL +++ + +l+  e+i +v+i++++Pwd+   +++++ek  yfF++++ +    +r+nr+t++g+W++ g++k+v+ +  +  
  ONIVA11G14160.1  25 HPTEGELVFHYLYRRAVNMPLPS-EFICDVNILRHNPWDIVpGALTEREKGKYFFMQKEIN----RRSNRITSKGFWRSAGSEKPVYYNqgG-- 111
                      9********************99.89**************547888899999****98774....69********************98551.. PP

              NAM  99 l.....vglkktLvfykgrapkgektdWvmheyrl 128
                            vg+++tL+fy g+++++e+t+W m+e+rl
  ONIVA11G14160.1 112 GsdcmlVGMRRTLTFYFGNSRTAERTKWGMQEFRL 146
                      234566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-3216156IPR003441NAC domain
PROSITE profilePS5100531.6618215IPR003441NAC domain
PfamPF023655.0E-1625146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MARVVLSTPI VNGATMHLPA VGMSHPTEGE LVFHYLYRRA VNMPLPSEFI CDVNILRHNP  60
WDIVPGALTE REKGKYFFMQ KEINRRSNRI TSKGFWRSAG SEKPVYYNQG GGSDCMLVGM  120
RRTLTFYFGN SRTAERTKWG MQEFRLAGNG LSPYPAMKHA TGDGSKPPCN CAETTIAKRN  180
DGLSAVLRNV LAVTPLVETV VEPDGSWLIC RIYRTRQRAL PVITPPAIEN AREIIIPPAN  240
GNAREAQVRF IDFLRQGSHI ESSSPCSCIV GPSLAEGSDE SAGSVDQKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-171414611140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9401960.0FJ940196.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.11e-111NAC transcription factor 25
TrEMBLA0A0E0J2A40.0A0A0E0J2A4_ORYNI; Uncharacterized protein
STRINGONIVA11G14160.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-25NAC domain containing protein 83