PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G04610.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 468aa    MW: 48160.5 Da    PI: 8.5767
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G04610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP156.91.2e-481463022137
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 
                      ag+k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  a+s +s+as+sss++aa+++
  ONIVA11G04610.1 146 AGAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSAASHSSSPRAAPFH 239
                      789******************************************************************9999********************* PP

              TCP  95 akskksqksaasalnlakesr....................akarararertrekmriknkln 137
                      + ++++q++ a++l ++++++                    a + +r+r+r++++ +++++++
  ONIVA11G04610.1 240 HLQQQQQHDVAAMLGFHHHHHqllppppphqhpeptpqdpgAGEFMRKRYREADDLFKDTSRQ 302
                      ******************9999********************************999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-37152261IPR005333Transcription factor, TCP
PROSITE profilePS5136928.349152206IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MIKDLRTLES WAKEKPEIEQ PALQAVVGGG GLRAAAAAAE GGMEQQAAPS SSTSTSTNSS  60
RSTSDHHAAA AAAAAAAAAQ VAHQHHPFYY AAAQGGANTM PAPASFMGSL AIVPAAAAPG  120
GGGGQVQAAA APVASSEKKA VVAAGAGAKR PTKDRHTKVE GRGRRIRMPA LCAARVFQLT  180
RELGHKTDGE TIEWLLQQAE PAIVAATGTG TIPANFSSLA VSLRSAASHS SSPRAAPFHH  240
LQQQQQHDVA AMLGFHHHHH QLLPPPPPHQ HPEPTPQDPG AGEFMRKRYR EADDLFKDTS  300
RQDPVDGATG EAEQKARAAA AAAAPPPTAP SAMWAVGPNT TGATAAFWMQ PAWAFPHGAG  360
AGAAGNTVQA PLQFMSRSSF PTAMNVTMAD NNNSSNNNLG MLAALNAGGG GRSGEHQHQH  420
EGQSPAEMDH QRRANGGGGE AGGAASSQFR MIINQFAIVR GFTSPESI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205390.0AC120539.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616519.10.0transcription factor PCF3
SwissprotQ53PH20.0PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0E0IYU10.0A0A0E0IYU1_ORYNI; Uncharacterized protein
STRINGONIVA11G04610.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.17e-37TCP family protein