PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G04040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 532aa    MW: 58338.1 Da    PI: 4.552
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G04040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS179.82e-551344692345
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                       +lLl+ Aeav++gd  la+ + +rl +       + +++++ Rla +f ++L++r+++ ++++y+   p++ +    s ++ ++++ +e+sP+
  ONIVA11G04040.1 134 SDLLLAGAEAVEAGDSILASVAFSRLDDFlsgipENGAASSFDRLAYHFDQGLRSRMSSASTGCYQ---PEPLP----SGNMLVHQIIQELSPF 220
                      679***********************998554333334479******************9899984...55554....456778899******* PP

             GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      +kf+h+t+NqaIl+a+ g+  vH++D++i++G+QW +L+  La    g   +R+T++   +  ++ +  ++ + L++fA++l++pf++n + ++
  ONIVA11G04040.1 221 VKFAHFTTNQAILDAIIGDMDVHVVDLNIGEGIQWSSLMSDLAR--CGGKFFRLTAITTYADCHASTHDTVVRLLSEFADSLELPFQYNSICVH 312
                      *******************************************7..4668*********887799999999999****************8777 PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnsesFlerflealeyysalfdsl 271
                      + ++l  +++  + + +++V++    ++    s+s+ +  + +L +vk+l+Pk+vv +e++       ++ +s+sF+e f+eal++++++f+s+
  ONIVA11G04040.1 313 NEDEL--HAFFEDCKGSVIVSCDTTSMYYK--SLSTLQ--SLLLVCVKKLQPKLVVTIEEDlvrigrgVSPSSASFVEFFFEALHHFTTVFESM 400
                      65555..777777799******99777775..554444..69*******************6555443444666******************** PP

             GRAS 272 eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                      ++ +   s     + vE ellg++i++ v + g+ r+e +      +e l   GF + +ls  + +qa++l+  ++
  ONIVA11G04040.1 401 ASCFIGSSyePCLRLVEMELLGPRIQDFVVKYGSVRVEANA-----SEVL--EGFMACELSACNIAQARMLVGLFN 469
                      77776666578899*********************999888.....5555..59*****************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.944107478IPR005202Transcription factor GRAS
PfamPF035146.8E-53134469IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MGPIIPEPHV SVTKSTVHFS PSISISPKQA GAGARLGSPP SPPPARTQPE QRTGRGMPPP  60
PRASVDSALH VDPCSDQQED LDLLDTMVLD SNELHQHDAP DVDVSINCDD RIFGQESVNL  120
AAIQEELLEE DSLSDLLLAG AEAVEAGDSI LASVAFSRLD DFLSGIPENG AASSFDRLAY  180
HFDQGLRSRM SSASTGCYQP EPLPSGNMLV HQIIQELSPF VKFAHFTTNQ AILDAIIGDM  240
DVHVVDLNIG EGIQWSSLMS DLARCGGKFF RLTAITTYAD CHASTHDTVV RLLSEFADSL  300
ELPFQYNSIC VHNEDELHAF FEDCKGSVIV SCDTTSMYYK SLSTLQSLLL VCVKKLQPKL  360
VVTIEEDLVR IGRGVSPSSA SFVEFFFEAL HHFTTVFESM ASCFIGSSYE PCLRLVEMEL  420
LGPRIQDFVV KYGSVRVEAN ASEVLEGFMA CELSACNIAQ ARMLVGLFNR PNKVIWSSLA  480
AGCGSHGIVV LAFYAADKLL EFKPKGIETY IHPAVERAHF HKEDRMWQEY EN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2917246853349Protein SCARECROW
5b3h_A2e-2917246852348Protein SCARECROW
5b3h_D2e-2917246852348Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205340.0AC120534.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0084A20, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617104.10.0nodulation-signaling pathway 2 protein
TrEMBLA0A0E0IYL40.0A0A0E0IYL4_ORYNI; Uncharacterized protein
STRINGONIVA11G04040.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-29GRAS family protein