PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G03830.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 445aa    MW: 50373.4 Da    PI: 6.5087
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G03830.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.85.3e-27114210186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++d
  ONIVA11G03830.2 114 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLLD 207
                      7*********************8744455667777**********************************************55*********** PP

         trihelix  84 qle 86 
                      +++
  ONIVA11G03830.2 208 HMD 210
                      *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-20112235No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEGSNPPGNM TQGPSYGSLD LHGISKQMHP PNSGNQGFNQ PQIPGNFTIP MDRVTEPDNI  60
SDGVQLGQHG KIAHHHHHHR HHSKNHGSDE EEHDMNEDAA DGKDKKGSPW HRMKWTDSMV  120
KLLITAVSYT GEDPGADLGG GRRNYSMMQK KGKWKAISKV MGERGCHVSP QQCEDKFNDL  180
NKRYKRLTDI LGRGTACNVV ENHSLLDHMD ISEKMKEDAR KILNSKHLFY EEMCSYHNNN  240
RISLPEDPAL QQSLQLALRC KEDNDFMRHA SGDAELDDDQ SEDSDYEGNE EEHRAVDTNI  300
RGPSMHKRMW HVVDYGDVGF VTSCSNDGSG RSDPYDVLDI NKPFPDGCDL ALVQKDLALK  360
AAEIQKHRLQ IETKAVQLAK QRLKWEMFRK NKDLELEKLA LENEQMMLQN KRLQINSIQD  420
RGVLFLTMNA EVKSKCGGLA SQMAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615142.10.0uncharacterized protein LOC4349866 isoform X2
TrEMBLA0A0E0IYI60.0A0A0E0IYI6_ORYNI; Uncharacterized protein
STRINGONIVA11G03830.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.15e-91sequence-specific DNA binding transcription factors