PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G01720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 99aa MW: 11464.9 Da PI: 4.8998 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.1e-10 | 14 | 38 | 1 | 25 |
TSSS-HHHHHHHHHHHHHTTTT-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWk 25 +g+WT+eEd +lv +++++G+g+W+ ONIVA11G01720.1 14 KGPWTPEEDIILVSYIQEHGPGNWR 38 79**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 5 | 39 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.097 | 9 | 38 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.58E-8 | 9 | 39 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.9E-8 | 14 | 39 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.26E-6 | 16 | 39 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MGRPPCCDKE GIKKGPWTPE EDIILVSYIQ EHGPGNWRSP QIRQALDQRG EPDQAYELIE 60 HFEIEKIEHA MNDHSASPQA PLFRVWERIK LQAPIFFGD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123525 | 4e-58 | AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence. | |||
GenBank | AK241549 | 4e-58 | AK241549.1 Oryza sativa Japonica Group cDNA, clone: J065176M15, full insert sequence. | |||
GenBank | AP014967 | 4e-58 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 4e-58 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0IXN6 | 2e-67 | A0A0E0IXN6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G01720.1 | 3e-68 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 4e-24 | myb domain protein 94 |