PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G01650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 27250.4 Da PI: 8.2062 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84.2 | 2.6e-26 | 6 | 85 | 62 | 128 |
NAM 62 skrdkkyatgkrknratksgyWkatgkdkevlsk.............kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++d ky+tg r+nratk+gyWkatgkd+e+++ +++lvg+kktLvfy grapkg+kt+Wvmhe+rl ONIVA11G01650.1 6 CHKDMKYPTGMRTNRATKEGYWKATGKDREIFNLqptsyggssnnknNKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRL 85 6899****************************9888999888887766677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 31.029 | 1 | 112 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-31 | 6 | 112 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-11 | 15 | 85 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGEKECHKDM KYPTGMRTNR ATKEGYWKAT GKDREIFNLQ PTSYGGSSNN KNNKQLVGMK 60 KTLVFYMGRA PKGTKTNWVM HEFRLHANLH NDNPNLRLNP KDEWVVCKVF HKKGDDREAI 120 NKQQAQAAAV DQYSAGTPNN GSSVEAGDDD DDLFQLDSII DPSIYFSNSS AANILSAPPN 180 MSNSVVAANY GASTTTTAEG GVHGIGSSYS LQHQAAMVKA LRDVIRLPNP LGMPQYKLDD 240 AYLWDSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-24 | 1 | 113 | 68 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-24 | 1 | 113 | 68 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-24 | 1 | 113 | 68 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-24 | 1 | 113 | 68 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-24 | 1 | 113 | 71 | 169 | NAC domain-containing protein 19 |
3swm_B | 6e-24 | 1 | 113 | 71 | 169 | NAC domain-containing protein 19 |
3swm_C | 6e-24 | 1 | 113 | 71 | 169 | NAC domain-containing protein 19 |
3swm_D | 6e-24 | 1 | 113 | 71 | 169 | NAC domain-containing protein 19 |
3swp_A | 6e-24 | 1 | 113 | 71 | 169 | NAC domain-containing protein 19 |
3swp_B | 6e-24 | 1 | 113 | 71 | 169 | NAC domain-containing protein 19 |
3swp_C | 6e-24 | 1 | 113 | 71 | 169 | NAC domain-containing protein 19 |
3swp_D | 6e-24 | 1 | 113 | 71 | 169 | NAC domain-containing protein 19 |
4dul_A | 5e-24 | 1 | 113 | 68 | 166 | NAC domain-containing protein 19 |
4dul_B | 5e-24 | 1 | 113 | 68 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in responses to drought stress and salt stress. Transactivates the stress response genes LEA19 and PM19L. {ECO:0000269|PubMed:19135985}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:19135985). Induced by drought stress (PubMed:19135985). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:19135985}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067922 | 0.0 | AK067922.1 Oryza sativa Japonica Group cDNA clone:J013121J10, full insert sequence. | |||
GenBank | CT829509 | 0.0 | CT829509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103O19, full insert sequence. | |||
GenBank | KP033191 | 0.0 | KP033191.1 Oryza sativa cultivar Dong Jin NAC-related protein 45 mRNA, complete cds. | |||
GenBank | KU167549 | 0.0 | KU167549.1 Oryza sativa cultivar Moctuyen NAC family protein (NAC45) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615868.1 | 1e-156 | NAC domain-containing protein 45 | ||||
Swissprot | Q2RB33 | 1e-157 | NAC45_ORYSJ; NAC domain-containing protein 45 | ||||
TrEMBL | A0A0E0IXM8 | 0.0 | A0A0E0IXM8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G01650.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 8e-39 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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