PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G01640.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 351aa    MW: 39345.9 Da    PI: 7.1578
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G01640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.67.7e-47141461127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhP d e++ +yL +k  + +++    i+evd++k+ePwdLp +++ +++ewy Fs++d ky+tg r+nratk+gyWkatgkd+e+++
  ONIVA11G01640.1  14 LPPGFRFHPADAEVILNYLLEKFINPSFTS-LPIHEVDLNKCEPWDLP-TARMGNNEWY-FSRKDMKYPTGMRTNRATKEGYWKATGKDREIFK 104
                      79**********************999888.56***************.4455777885.7999****************************** PP

              NAM  95 k.........kgelvglkktLvfykgrapkgektdWvmheyr 127
                                +++lvg+kktLvfy grapkg++t+Wvmhe+r
  ONIVA11G01640.1 105 PaiyegssknNKQLVGMKKTLVFYMGRAPKGTRTNWVMHEFR 146
                      99999999887888***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5210173IPR003441NAC domain
PROSITE profilePS5100548.814173IPR003441NAC domain
PfamPF023651.1E-2115146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVEPVKSELG SLFLPPGFRF HPADAEVILN YLLEKFINPS FTSLPIHEVD LNKCEPWDLP  60
TARMGNNEWY FSRKDMKYPT GMRTNRATKE GYWKATGKDR EIFKPAIYEG SSKNNKQLVG  120
MKKTLVFYMG RAPKGTRTNW VMHEFRPHAN LHNHYPNLRL NPNEWVVCKV FHKKQGDEAI  180
KNQQQQPAVD QADDDDIFQL DDIFADPSIY DFSNSSANIL SAPPNNNAVH SSVSAGTTMT  240
STTTASSFQH QPNCYSAPLQ QHVSSWNNTP GAGGAHGIGS SYYNLQQQQQ QAAMVKDLED  300
IIAVPDYGTL LPSSNKGSSI RSATAGVSQQ NPLGVPQYKI ENYGDHYISR E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-41917412166NO APICAL MERISTEM PROTEIN
1ut4_B3e-41917412166NO APICAL MERISTEM PROTEIN
1ut7_A3e-41917412166NO APICAL MERISTEM PROTEIN
1ut7_B3e-41917412166NO APICAL MERISTEM PROTEIN
3swm_A3e-41917415169NAC domain-containing protein 19
3swm_B3e-41917415169NAC domain-containing protein 19
3swm_C3e-41917415169NAC domain-containing protein 19
3swm_D3e-41917415169NAC domain-containing protein 19
3swp_A3e-41917415169NAC domain-containing protein 19
3swp_B3e-41917415169NAC domain-containing protein 19
3swp_C3e-41917415169NAC domain-containing protein 19
3swp_D3e-41917415169NAC domain-containing protein 19
4dul_A3e-41917412166NAC domain-containing protein 19
4dul_B3e-41917412166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235190.0AC123519.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence.
GenBankAC1235250.0AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence.
GenBankAK2882710.0AK288271.1 Oryza sativa Japonica Group cDNA, clone: J090017A22, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616089.10.0NAC domain-containing protein 77-like
SwissprotQ5CD171e-179NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A0E0IXM70.0A0A0E0IXM7_ORYNI; Uncharacterized protein
STRINGONIVA11G01640.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-62Arabidopsis NAC domain containing protein 87