PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G01240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 320aa MW: 35954.1 Da PI: 6.618 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 57.8 | 2.2e-18 | 146 | 200 | 3 | 56 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeH 56 Dg++WrKYGqK++k+s++prsYYrCt++ +C+++k v++ + d + Y+g+H ONIVA11G01240.1 146 DGHQWRKYGQKHIKNSKHPRSYYRCTYRqeeKCKATKTVQQRE-DLHHA-NSYNGDH 200 9**************************99999********987.43332.2344444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-21 | 139 | 214 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-18 | 140 | 214 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-30 | 144 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-22 | 146 | 214 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.158 | 146 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MKNSSNKRSL VADQWHPSSV CCDHRAALRE IAKGQSLVTQ LRAIVLPALH SDERCDLAAQ 60 MLEGILDCSR KAVSQLQLLL SSPHDDDDHH HVDDKRRVRK IISSSDDDDH CSSKAAEDHN 120 AKPLRQHKRR RFGDSVSLET PVPHYDGHQW RKYGQKHIKN SKHPRSYYRC TYRQEEKCKA 180 TKTVQQREDL HHANSYNGDH PIMYTVVYYG QHTCCKGPAA LADDHVVVEA SQISTDSHCQ 240 SPSSSSDLQA AEVHAGNSSQ CSNISVTCSS SVVVEDCNKL LDMMPAADEL TADVLLFDMT 300 AYAPLDLDIN WEMDINALWV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 7e-14 | 146 | 214 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK289175 | 0.0 | AK289175.1 Oryza sativa Japonica Group cDNA, clone: J100021A14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616436.1 | 0.0 | probable WRKY transcription factor 54 | ||||
TrEMBL | A0A0E0IXG2 | 0.0 | A0A0E0IXG2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2ZAU4 | 0.0 | A2ZAU4_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA11G01240.2 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3258 | 30 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 2e-17 | WRKY DNA-binding protein 70 |