PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G01070.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 672aa    MW: 73271.3 Da    PI: 6.7778
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G01070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.16.6e-22129189359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                      Dgy+WrKYGqK+++g+ +prsYYrCt +   gC +kk v+r+   + +  ++ Y +eH+++
  ONIVA11G01070.1 129 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNGGGGAAgYTVAYISEHTCK 189
                      9************************9888889**********98776537899*****997 PP
2WRKY53.25.9e-17510564356
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeH 56 
                      Dg++WrKYGqK++++s++prsYYrC+++   +C+++k v++ + d +  +  Y+g+H
  ONIVA11G01070.1 510 DGHQWRKYGQKHINNSKHPRSYYRCAYRqeeKCKATKTVQQRE-DLQHAN-SYNGDH 564
                      9**************************99999********987.444332.344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-23114190IPR003657WRKY domain
SuperFamilySSF1182907.19E-21120189IPR003657WRKY domain
SMARTSM007742.8E-31127190IPR003657WRKY domain
PfamPF031068.9E-22129189IPR003657WRKY domain
PROSITE profilePS5081119.52129170IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-20503578IPR003657WRKY domain
SuperFamilySSF1182902.88E-18504578IPR003657WRKY domain
SMARTSM007742.8E-28508580IPR003657WRKY domain
PfamPF031069.3E-22510578IPR003657WRKY domain
PROSITE profilePS5081114.584510550IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MEEAYCMMMV GRERELVAEL RHLLFPSPSP TTPASHSTTA LTGDDECLPP GLTTTTTVSG  60
GGGRRRGRKR VRRDNDNLKL LQADDDQEVL AAAVHGDANA KPLPNFTKTS RRKLQTTTST  120
MVTTVPDFDG YQWRKYGQKQ IEGAMYPRSY YRCTNSTNQG CLAKKTVQRN GGGGAAGYTV  180
AYISEHTCKS IEPSLPPVIL DTTVRATNNH HPPAASSSCA AQSPAAAATS SSSDMMMTST  240
SSTSSETGNW SGQHGAYACR RQMIAADEEY CCWDTPATTT TSGSDGGNSS TCADQVIDLM  300
SGPIRSPLHI AADGNWTKED DMLRYKLERV PFLEEKDPAT LGSCPGSGAA CIIRLVLNHG  360
IKEMKNSSNK RPLVADQWHP SSVCCDHRAA LREIARGQSL VTQLRAIVLP ALHSDERGDL  420
AAQMLEGILD CSRKAISELQ LQLSSDSPHD DDGHLDDKRR VRKIVSSSSD DDDHSSSKAA  480
EDHNAKPLRQ HKRRRFGDSV SLETPVPHYD GHQWRKYGQK HINNSKHPRS YYRCAYRQEE  540
KCKATKTVQQ REDLQHANSY NGDHPVMYTV VYYGQHTCCK GPVASADDHV VVEASQISTD  600
SHCQSPGSSS SELQAAAHAG DSSQCSNISV TCSSSVVVED CNKLLDMLPA ADELTTDVLG  660
SDPQPPQYST YL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-131295781069OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472RRGRKRVRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981830.0DQ298183.1 Oryza sativa WRKY transcription factor 64 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620021.10.0probable WRKY transcription factor 70
TrEMBLA0A0E0IXD80.0A0A0E0IXD8_ORYNI; Uncharacterized protein
STRINGONIVA11G01070.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-17WRKY DNA-binding protein 70