PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G01050.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 263aa    MW: 29665.1 Da    PI: 8.5706
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G01050.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.71.1e-18105169259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                      +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  ONIVA11G01050.2 105 NDGHQWRKYGQKWISRAKHSRSYYRCANRkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 169
                      8**************************988889********99876522226899*******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-2290169IPR003657WRKY domain
PROSITE profilePS5081114.66599146IPR003657WRKY domain
SuperFamilySSF1182901.44E-19100169IPR003657WRKY domain
SMARTSM007748.1E-29104170IPR003657WRKY domain
PfamPF031068.3E-22105169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MARRRVSAGA ASTPIHQIGI QGRTTKALHG CSVVIKSSTS VVGPYAWVRS RGGRNKLSVQ  60
TIGKRKGDKH SMDNHNLEEE AKESVSKRRK NAEHTGSTVA QAPHNDGHQW RKYGQKWISR  120
AKHSRSYYRC ANRKVQGCPA TKTVQQMDSS GNGTSKLFNV DYYGQHTCRG DGIANPYVVD  180
TAHHSMEPIN QNECNSPTLE HEAHEVQDER FENLCMVQNM PEYLIDFELE RAFEFIVNSP  240
LGSEHWTFDD SIRCEHSPIC IWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8343140.0CT834314.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620025.10.0probable WRKY transcription factor 46 isoform X4
TrEMBLA0A0E0IXD10.0A0A0E0IXD1_ORYNI; Uncharacterized protein
STRINGONIVA11G01050.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-16WRKY DNA-binding protein 46