PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G01050.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 277aa    MW: 31077.6 Da    PI: 8.4062
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G01050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.61.2e-18119183259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                      +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  ONIVA11G01050.1 119 NDGHQWRKYGQKWISRAKHSRSYYRCANRkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 183
                      8**************************988889********99876522226899*******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.6E-22104183IPR003657WRKY domain
PROSITE profilePS5081114.665113160IPR003657WRKY domain
SuperFamilySSF1182901.57E-19114183IPR003657WRKY domain
SMARTSM007748.1E-29118184IPR003657WRKY domain
PfamPF031069.1E-22119183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MARRRVSAGA ASTPIHQIGI QGRTTKALHG CSVVIKSSTS VVGPYAWVRS RGGRNKLSVQ  60
TIELGGDTNK LTNLVGGKRK GDKHSMDNHN LEEEAKESVS KRRKNAEHTG STVAQAPHND  120
GHQWRKYGQK WISRAKHSRS YYRCANRKVQ GCPATKTVQQ MDSSGNGTSK LFNVDYYGQH  180
TCRGDGIANP YVVDTAHHSM EPINQNECNS PTLEHEAHEV QDERFENLCM VQNMPEYLID  240
FELERAFEFI VNSPLGSEHW TFDDSIRCEH SPICIWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020930.0AK102093.1 Oryza sativa Japonica Group cDNA clone:J033083A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620023.10.0probable WRKY transcription factor 46 isoform X2
TrEMBLA0A0E0IXD00.0A0A0E0IXD0_ORYNI; Uncharacterized protein
STRINGONIVA11G01050.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133251529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-16WRKY DNA-binding protein 46