PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G01010.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 335aa    MW: 37206.4 Da    PI: 5.4819
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G01010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.72.4e-23141202259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      +Dg++WrKYG K+++g++f+rsY+rCt++   gC+++k+++++ ++dp ++++tY++eH+++
  ONIVA11G01010.1 141 EDGFQWRKYGEKKIQGTHFTRSYFRCTYRddrGCQATKQIQQKdNNDPPMFQVTYSNEHTCT 202
                      8***************************99999*******8751679*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-23133202IPR003657WRKY domain
SuperFamilySSF1182901.31E-21134202IPR003657WRKY domain
SMARTSM007741.1E-33140203IPR003657WRKY domain
PROSITE profilePS5081117.167141204IPR003657WRKY domain
PfamPF031064.0E-25141201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAVTESACLS YEQEAVAVRE VAQVYELIKT QQPLLLVHQQ PQQLAHGLLN HALRALNVAL  60
SVMNQPHASS SAAAAAVPVM SMIKAEAATP ANSSSPAADV AADNHVVGKP RRSSSAAKRR  120
RINGEEYKSS SWSQFTPVPH EDGFQWRKYG EKKIQGTHFT RSYFRCTYRD DRGCQATKQI  180
QQKDNNDPPM FQVTYSNEHT CTTTRLINNI NNPAALHNLT ANPNGHHDSD DDDTIFTKMI  240
KQEEQAAWLP PPPPADLATI SNNFDETPGL HVCQEVPPSS SNSSVISHYA DEFDHHQMLE  300
TTVMEEALGL GADLDDPYFY DPNLLLIYES LMNCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-14141201968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117121KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616433.10.0probable WRKY transcription factor 70
TrEMBLA0A0E0IXC60.0A0A0E0IXC6_ORYNI; Uncharacterized protein
TrEMBLA2ZAT90.0A2ZAT9_ORYSI; Uncharacterized protein
STRINGONIVA11G01010.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-20WRKY family protein