PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G13970.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 290aa    MW: 30428.1 Da    PI: 6.5049
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G13970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33124181259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  ONIVA10G13970.1 124 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHSHH 181
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-34108182IPR003657WRKY domain
SuperFamilySSF1182907.32E-29115181IPR003657WRKY domain
PROSITE profilePS5081130.079118183IPR003657WRKY domain
SMARTSM007743.4E-39123182IPR003657WRKY domain
PfamPF031065.8E-27124181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAMAGAGDWP FAADEAYADS SAIFAELGWA NGLAVVDAVG ELLPPLDPPG ELATPPPPPL  60
DLPETPAGSS ADGAASSCST DDADGGKPAA ASTEAASKSL TPGKKRARQP RFAFMTKSEI  120
DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT NSKCTVKKRV ERSSDDPSVV ITTYEGQHSH  180
HTVTFPRAAA TAAGFSHIHA MAALAAAPFS AHQQLYSNLQ PPPPTMPLAA TTPASSSSLL  240
QLPLHCNHEL QVVASCGGYP SSSSPPPASV LPVDKGLLDD MVPRAMRHDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26113180774Probable WRKY transcription factor 4
2lex_A1e-26113180774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2409580.0AK240958.1 Oryza sativa Japonica Group cDNA, clone: J065045F23, full insert sequence.
GenBankAY3418580.0AY341858.1 Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645717.10.0probable WRKY transcription factor 57
TrEMBLA0A0E0ITS50.0A0A0E0ITS5_ORYNI; Uncharacterized protein
STRINGONIVA10G13970.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-53WRKY DNA-binding protein 57