PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G09230.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 345aa    MW: 36533.4 Da    PI: 5.1803
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G09230.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.81.4e-1277955127
              NAM  55 ek.ewyfFskrdkkya...tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      e+  +yfFs+ + k+a   ++k ++ra++ g+Wka   + ++++ +g  vg k ++ fy     kg++t+W mhe+ 
  ONIVA10G09230.2   7 ENgYIYFFSTIEFKAAkpkQKKWPRRAAQGGRWKAVLGSSQMVEVGGVPVGRKLSMEFY----VKGVRTNWGMHEFV 79 
                      332559**998777663335778899********88666666666**************....899*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.653199IPR003441NAC domain
SuperFamilySSF1019412.62E-15797IPR003441NAC domain
PfamPF023651.8E-51178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006887Biological Processexocytosis
GO:0000145Cellular Componentexocyst
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MYAEDEENGY IYFFSTIEFK AAKPKQKKWP RRAAQGGRWK AVLGSSQMVE VGGVPVGRKL  60
SMEFYVKGVR TNWGMHEFVR IIGPNIEVAD LAVYRLHKLW TNGEEKPGDL AADVAKSTNQ  120
SGQASAADYY QTYQNAVSQA YAYAPPYVLQ PGWSQGYPYD VAAAPPTAPW PVCWAPPSAP  180
GSYDCCYAST FSRPPPPPPI AASTLDKAPI TSTDHGASTN TSAATPAANN KPPPPPVAAT  240
ATTLGKKGEG KGKAPTTTST DHAGSTNTSA PPAANYQPPP LQGTQHVFAS GVVIGHEDEE  300
GYLVVDEVNT WRNTQQLVLE DDDDDDDGRA AGAGAGEGGA SASGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099040.0AK109904.1 Oryza sativa Japonica Group cDNA clone:002-149-F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614522.10.0uncharacterized protein LOC4348616
TrEMBLA0A0E0IS180.0A0A0E0IS18_ORYNI; Uncharacterized protein
STRINGORGLA10G0084800.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.11e-07NAC domain containing protein 3