PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G08840.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 838aa    MW: 91429.3 Da    PI: 8.0999
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G08840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.71.2e-19482032127
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.....................kvkaeek.ewyfFskrdkkya..t 70 
                       +G+ F P+d el     +k + g+    l++v+++++i++++P  L+                       + +ee+  +yfF +r+ +++  +
  ONIVA10G08840.1  48 LVGCYFVPKDLELFAILRCKLICGQLpSALNNVFEHIRILEFHPALLHGmpasppplylslsvpfinhqtYIGKEEDgYIYFFNRRQFATKagN 141
                      68************766566666665344556799************844889**********9998865333344435599998876655225 PP

              NAM  71 gkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      ++r+++++k g+Wka+  +k v sk  +g ++g k t++fy    + ++k+ kt+W mhe++
  ONIVA10G08840.1 142 KRRPTQVAKGGTWKASSGSKMVRSKkvGGIDIGQKLTMMFYerrFEGDRKPIKTNWDMHEFT 203
                      667788899*************998888889**********43313456778********97 PP
2NAM83.15.5e-265907261127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLp.kkvka.eekewyfFskr..dkkyatgkrknratksgyWkatgkd 89 
                      +p+Gf F P+d el    ++k v+g+   + ++v+++++i++++P  L+ + +++ e++ +yfFs+r  + k+++++++ r++++g+Wka+g +
  ONIVA10G08840.1 590 MPVGFYFVPKDLELFAILMCKLVRGEVPGAlNNVFEHIRILEFHPALLReTYIENmEDRCIYFFSRRlfAAKARNKRQPMRVANDGTWKASGGS 683
                      699**************99999*99996551456999***********84455552444569**99844456668889999************* PP

              NAM  90 kevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      k+v sk  +g +vg k t+vfy    + +++++kt+W mhey+
  ONIVA10G08840.1 684 KTVRSKkvGGIDVGQKLTMVFYerwFEGDQNPVKTNWAMHEYT 726
                      ****99888899**********55524566779*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-2442211IPR003441NAC domain
PROSITE profilePS5100523.8147224IPR003441NAC domain
PfamPF023651.2E-1049203IPR003441NAC domain
SuperFamilySSF1019416.15E-33585750IPR003441NAC domain
PROSITE profilePS5100531.299590747IPR003441NAC domain
PfamPF023651.2E-13591726IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MSAWLPQLEI AAEQPPEGGG NGGGNNNGKW KGKEKVVPKH GKNRHGMLVG CYFVPKDLEL  60
FAILRCKLIC GQLPSALNNV FEHIRILEFH PALLHGMPAS PPPLYLSLSV PFINHQTYIG  120
KEEDGYIYFF NRRQFATKAG NKRRPTQVAK GGTWKASSGS KMVRSKKVGG IDIGQKLTMM  180
FYERRFEGDR KPIKTNWDMH EFTKIIDDSK NQKPGRRTKR IGERCLRGVD EPSTSSALPP  240
PTPPRPLPDM AGPSSATPLL PLQLPDMAGQ SSATPLLPLQ LLGLAGSSSA MSLPVLQLPG  300
MAGSSSAMPL QLSLPGLAGE MMSMADQANM ASTSQASTPS SELLQDWYDE FEITYGAVTP  360
PSPSTISWEA PQSSPMGWWP SPNGGLVQHD GYLRMAADPT WYMLEHLLPT AAIPPEPMTP  420
KKSSPAPPPA VDHHHRLSPP HDAAGSNYNH PKLAGYNGGI QAQHENQHHP QEPQPALLVD  480
GEDGYGAMAD SNDTQLGGTE FDTERIAEMD NTVLKYNEVF PDDDEVVAAP MMIDSGAMVQ  540
RDVMETTHST IRALPADGDG GGSGGSNNNN GKLKGKEKVV PEYGKNRHGM PVGFYFVPKD  600
LELFAILMCK LVRGEVPGAL NNVFEHIRIL EFHPALLRET YIENMEDRCI YFFSRRLFAA  660
KARNKRQPMR VANDGTWKAS GGSKTVRSKK VGGIDVGQKL TMVFYERWFE GDQNPVKTNW  720
AMHEYTKIIP GSKNQLEDLA VYRLYKIRRK EDTEPVNAAA AASSTDKPST PEALPPPTPP  780
PRPLLNMAGS SSATSLLPPQ LPGLAGSSST MPLALPLQLP GLPGSSAAMS LCRAWLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-1259074617164NO APICAL MERISTEM PROTEIN
1ut4_B1e-1259074617164NO APICAL MERISTEM PROTEIN
1ut7_A1e-1259074617164NO APICAL MERISTEM PROTEIN
1ut7_B1e-1259074617164NO APICAL MERISTEM PROTEIN
4dul_A1e-1259074617164NAC domain-containing protein 19
4dul_B1e-1259074617164NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.10.0NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0IRW50.0A0A0E0IRW5_ORYNI; Uncharacterized protein
STRINGONIVA10G08840.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.11e-14NAC domain containing protein 3