PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G08520.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 532aa    MW: 57443.4 Da    PI: 4.8661
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G08520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.68e-26361721127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkd 89 
                      +p+G  F P+d el     +k v+g+    l++v+++++i++++P  L+ + + +ee+  +yfFskr+ +++  +++r++r+tk g+Wka+g +
  ONIVA10G08520.1  36 MPVGWYFVPKDLELFAILRCKLVRGQLpGALNNVFEHIRILEFHPALLHeTYIGNEEDgYIYFFSKRQFTTKagNKRRPTRVTKGGTWKASGGS 129
                      699************7766666666653334566999***********8445555555356****9986555337889**************** PP

              NAM  90 kevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      k+v sk  +g +vg k t+vfy    + ++++ kt+W mhe++
  ONIVA10G08520.1 130 KTVRSKkvGGIDVGQKLTMVFYerrFEGDRNPIKTNWGMHEFT 172
                      ****99888899**********43312456678********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-3530196IPR003441NAC domain
PROSITE profilePS5100531.46136193IPR003441NAC domain
PfamPF023651.3E-1337172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MAEQPPKGRG GGGNNNGKWK GKEKVVPEYG KNRHGMPVGW YFVPKDLELF AILRCKLVRG  60
QLPGALNNVF EHIRILEFHP ALLHETYIGN EEDGYIYFFS KRQFTTKAGN KRRPTRVTKG  120
GTWKASGGSK TVRSKKVGGI DVGQKLTMVF YERRFEGDRN PIKTNWGMHE FTKIIDGTKN  180
QLEDLAVYRL YKIKRKEDEE PSNTAAAASS TDEPSTSSAL PPPTPPRPLP DMAGPSSATP  240
LLPLQLPGLA GSSSAMSLPA LQLPGMAGSS SAMPLPPLSL PGLAGGMMSM ADQAKPLQLP  300
GLATPSSELL QDWYDEFEIT YGAVAPPSPS TISWVAPQSS PTGWWPSPNG GPVQHDGYLG  360
MAADPTSYML ENLLPTAAIP PEPMMPPTSS PAPPPAVDHH HRLSPPHDAA GSNYNHPELA  420
DYNGGVQAQH EHQYHPQEPQ ASLVDAEDGY SAMAGGDDAQ LGGAELDTER IAEMVNHIMD  480
GEFEFKFEDN TVLKYNEVFP DNDEVVAAPM MIDGGRDGDG ADGGDGDDPF DN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0923880.0AC092388.5 Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence.
GenBankAC1221440.0AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613639.10.0NAC transcription factor NAM-B2
TrEMBLA0A0E0IRS60.0A0A0E0IRS6_ORYNI; Uncharacterized protein
STRINGONIVA10G08520.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.11e-13NAC family protein