PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G07560.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 762aa    MW: 88825.5 Da    PI: 9.0172
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G07560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM232.1e-072312913128
              NAM  13 elvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFsk.rdkkyatgkrknratksgyWkatgkdkevlskkgelvglkkt 105
                      e++  +L+++ + ++l+  +++  vd++ ++P+d p       + w+   + ++  y  +++  r++k+gyWk      ++ + +++  g+k  
  ONIVA10G07560.1  23 EII-MFLAERKTWDPLPQ-NILVGVDLTMIDPRDSP------GTLWFLNWPdNQLCYDDENNVFRKAKNGYWKCVDA-CRIQT-GTSILGVKLC 106
                      556.67777777777777.78999999999999998......3456554440444566788888999******8866.56766.8999****** PP

              NAM 106 LvfykgrapkgektdWvmheyrl 128
                      L f++g++p g+++  +m ey +
  ONIVA10G07560.1 107 LEFHEGQTPCGTRSGLMMYEYLI 129
                      *********************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-236150IPR003441NAC domain
PROSITE profilePS5100518.2111150IPR003441NAC domain
SuperFamilySSF540012.42E-8554758No hitNo description
Gene3DG3DSA:3.90.70.107.0E-8554758No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MELFSRVLPP LGIAMGDSWS ATEIIMFLAE RKTWDPLPQN ILVGVDLTMI DPRDSPGTLW  60
FLNWPDNQLC YDDENNVFRK AKNGYWKCVD ACRIQTGTSI LGVKLCLEFH EGQTPCGTRS  120
GLMMYEYLIE QNDELNLPQA YKSLCRMFLQ EDRKIVEDEH ISLNLGVHHN FLGSYSQYLA  180
EIQRQNMVMN SQAVSSDKKS IFIRELDERK SKKCSTKITR SSTRLYRQKI PHIWCLRHSV  240
SRKWFRESMF RVIDKLAKLL ESVLLDLATV RQKINKGKKR IWKMEGKLEK AQIQHLTDFN  300
NKYGPSIRQS VETAEHNNCA LRCLNNYLEL MIEEPRFSSI AYVRLDSQVK KLDKENTSAM  360
DLSSSLHQML QKLNLRVQDE EVWVSQLGSN LQASFRKIMD TSSEIGKLED EVLQLKVDIA  420
EFAPGEVTSC AVYEMIKTLQ IVELFMNNST RHLKLIDGIN SEMREFGSIF NGKVRCLVRS  480
ARYQQTIMEK STQINLFQII NFLGDIRAKV DKMTQMYGLS EVVPIVSNQF IEGSFNADAY  540
AFESLKEHST DLCFSWRTRK FHNRLILPPV RQQTSGTCSY YATLSSVESL YKREYASYPT  600
ILKDKIGQPD EFLVNLSRAQ WEDIVEDFYT RHKVKGSKRL NVCLDKMKNE GVISEESYMN  660
PQAQSTERYK IKQYEELNLE IAMRERDKEE VSIVDKKCIG KKKKRRFRKK MRMKEHIFLT  720
KIKKVIESHI MDGKVLIASF RVTTGYFRLL PHQIYKIPEE DP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1700705KKKKRR
2700708KKKKRRFRK
3701705KKKRR
4705711RFRKKMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0645520.0AK064552.1 Oryza sativa Japonica Group cDNA clone:002-112-C01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612846.10.0uncharacterized protein LOC4348481 isoform X2
TrEMBLA0A0E0IRD70.0A0A0E0IRD7_ORYNI; Uncharacterized protein
TrEMBLA2Z6K70.0A2Z6K7_ORYSI; Uncharacterized protein
STRINGONIVA10G07560.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2031355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-12NAC domain containing protein 83