PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G05840.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 1690aa    MW: 191694 Da    PI: 9.2596
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G05840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.71.6e-081822791092
              NAM  10 tdeelvveyLkkkvegkk......leleevikev.diykvePwdLpk.........kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                      + eel++ yL++k++g +      ++++++ + + diy+v+P +L            ++ + + w++F++r++++ +g r++++t sg W    
  ONIVA10G05840.1 182 KKEELICLYLRNKLDGFRddiecvIPVFDIYSVIfDIYSVDPLQLSGtstrvylllPAARRGSGWFYFFPRQEREVRGGRPSQTTPSG-WVFPI 274
                      579*************99666666566566555569*********844676766653334678********************99988.76555 PP

              NAM  88 kdkev 92 
                       ++++
  ONIVA10G05840.1 275 AKRQI 279
                      55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-9182270IPR003441NAC domain
SMARTSM002420289950IPR001609Myosin head, motor domain
PROSITE profilePS51456238.796298949IPR001609Myosin head, motor domain
SuperFamilySSF525401.16E-2492991001IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF000632.1E-152300714IPR001609Myosin head, motor domain
CDDcd013840312937No hitNo description
PRINTSPR001931.9E-50328347IPR001609Myosin head, motor domain
Gene3DG3DSA:3.40.50.3002.7E-5384422IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR001931.9E-50385410IPR001609Myosin head, motor domain
PRINTSPR001931.9E-50432459IPR001609Myosin head, motor domain
PRINTSPR001931.9E-50679707IPR001609Myosin head, motor domain
SMARTSM0001517951973IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.291952981IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0012974996IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.3229751004IPR000048IQ motif, EF-hand binding site
PfamPF006122.6E-4976995IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.11E-119981098IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.599991021IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0510221044IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.09610231052IPR000048IQ motif, EF-hand binding site
PfamPF006120.001410241043IPR000048IQ motif, EF-hand binding site
Gene3DG3DSA:1.20.5.1903.3E-410261060No hitNo description
SMARTSM000151810471069IPR000048IQ motif, EF-hand binding site
PfamPF006120.1310501064IPR000048IQ motif, EF-hand binding site
SMARTSM0001529010701092IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.7310711100IPR000048IQ motif, EF-hand binding site
CDDcd15475013311652No hitNo description
PROSITE profilePS5112646.713801629IPR002710Dilute domain
SMARTSM011321.3E-3815041611IPR002710Dilute domain
PfamPF018439.3E-2415051608IPR002710Dilute domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016459Cellular Componentmyosin complex
GO:0003677Molecular FunctionDNA binding
GO:0003774Molecular Functionmotor activity
GO:0003779Molecular Functionactin binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1690 aa     Download sequence    Send to blast
MSLKSLTLAV RPAVDAGPTA DGRRPWTAKD ARWRGGQRPA ATPADEGKSQ EAAWPVAPWA  60
CGERQAGGTR ESAAAGEPRA GEGPGGWEGR RSGGGRAPAR RRGGGETRAV PGRQAAVQRC  120
RAGGEFVQPH YYFFTGSAPG FSVMSYRKGS KVWVEEKGEG WVEAEVVEVK DRAIVMLTSH  180
RKKEELICLY LRNKLDGFRD DIECVIPVFD IYSVIFDIYS VDPLQLSGTS TRVYLLLPAA  240
RRGSGWFYFF PRQEREVRGG RPSQTTPSGW VFPIAKRQIT VLAEKCLPRD TDEDLGGGHV  300
DDMTKLTYLN EPGVLYNLKR RYALNEIYTY TGSILIAVNP FTRLPHLYNE YMMEQYKGVR  360
LGELSPHVFA VADASYRAMV NDSRSQSILV SGESGAGKTE TTKFIMQYLT YVGGRAAIDD  420
RTVEQQVLES NPLLEAFGNA KTVRNDNSSR FGKFVEMQFD ANGRISGAAI RTYLLERSRV  480
VQINDPERNF HCFYQLCASG KDAELYKLGH PGSFHYLNKS KTYELEGTNN EDEYWKTKRA  540
MDIVGISRND QDAIFRILAA ILHLGNIEFS PGKEIDSSKI KDPTSNFHLQ MAAKLFMCDP  600
DLLVSTLCTR AINTLEGAII KALDCSAAAA NRDALAKTVY ARLFDWYFHL PSFFQGYCAF  660
LLVENINKSI GQDVDSKVQI GILDIYGFES FKNNSFEQFC INFANEKLQQ HFNEKPIGII  720
ALLDEACMFP KSTHETFATK MFRNFSSHHR LEKTKFSETD FTISHYAGKV TYQTESFLEK  780
NRDYIVAEHC NLLSSSRCPL VSGLFGTLPE ESLRSSYKFS SVASRFKQQL QALMETLNST  840
EPHYVRCVKP NSVNQPQIFE NQSVLHQLRC GGVLEAVRIS LAGYPTRRTY AEFVDRFGVL  900
VPELMLGSYD ERALTKGILE KMKLDNFQLG STKVFLRAGQ IAILDMRRAE VLENAARHIQ  960
GRFRTFITRK EFVKTREASI SIQAYCRGCL ARKKYMVKRE TAAAIIVQKY VRRWRLHRTY  1020
QQSHSAALLI QSCIRGFIAR HYFSVIREQK AALVIQSLWR KWKVIILFQQ YRQATVAIQC  1080
AWRQKVARRE LRRLKMAANE AGALREAKNK LEKKLDDLTL RLTLERRLRA AGEEAKSVEI  1140
LKRDKLIESL SAECAAAKSA AQSEHDKNLL LQRQLDDSLR EITMLRSSKI MTAEAERENS  1200
NLKNLVESLS KNNSSLEYEL TSARKGSDAT MKKLKDVEGK CNHLQQNLDK LQEKLTNMEN  1260
ENHVLRQKAL NMSPLNNMPM TTKAFPQKFA TPIGLPNGEQ KHGYETPPPV KYLASLPQSL  1320
TRSRRTRMPV ERQEENHEIL LRCIKENLGF KDGKPVTACI IYSCLLHWRA FESERTAIFD  1380
HVIEAINNVL KTLRSPSKLM GRSDNLGQVD ARYPAILFKQ QLTACVEKIF GQLRDNLKKE  1440
ISPLLSVCIQ APKSSRAQPG KATKSPGIGA QPPSNSHWDN IVKFLDLLMD TLHENYVPSF  1500
FIRKLITQLF SFINIQLFNS LLLRRECCTF SNGEYVKAGL SLLEKWITDA TDEFAGTSMH  1560
ELNYIRQAVG FLVIHQKRKK KLEEIRNELC PNLSVRQIYR ICSMYWDDKY NTQGISNEVV  1620
SAMREEVNKD TQNLVSNSFL LDDDLCIPFS TEDLSIAIPA IDYVDIELPE SLHHYASVQL  1680
LLKHHDPQPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2dfs_A0.02851219571038Myosin-5A
2dfs_M0.02851219571038Myosin-5A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMyosin XI motor protein required for endoplasmic reticulum motility and protein body formation (PubMed:22892319). May function by binding with its tail domain to receptor proteins on membranes and exerting force with its N-terminal motor domain against actin filaments, thereby transporting its cargo along polarized actin cables (By similarity). {ECO:0000250|UniProtKB:Q0WPU1, ECO:0000269|PubMed:22892319}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0668760.0AK066876.1 Oryza sativa Japonica Group cDNA clone:J013075D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614069.10.0protein OPAQUE1
SwissprotK7U9N80.0OP1_MAIZE; Protein OPAQUE1
TrEMBLA0A0E0IQS10.0A0A0E0IQS1_ORYNI; Uncharacterized protein
STRINGONIVA10G05840.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-14NAC domain containing protein 90
Publications ? help Back to Top
  1. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  2. Wang G, et al.
    Opaque1 encodes a myosin XI motor protein that is required for endoplasmic reticulum motility and protein body formation in maize endosperm.
    Plant Cell, 2012. 24(8): p. 3447-62
    [PMID:22892319]