PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G05410.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 286aa    MW: 31930.9 Da    PI: 8.3021
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G05410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY43.75.5e-1463134259
                      --SS-EEEEEEE--TT-SS-EE..........EEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprs..........YYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                       Dg+ WrKYG K++k+s fpr           YYrC+++   +C+++k v++++  dp +  +tY   H+++
  ONIVA10G05410.1  63 TDGHLWRKYGEKKIKNSSFPRRwcktvaiyrlYYRCSYRddrNCMATKVVQQENdADPPLYRVTYIHPHTCN 134
                      7*******************854555555555******99999*******9865269************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.14E-1658135IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-1961134IPR003657WRKY domain
SMARTSM007745.1E-2962135IPR003657WRKY domain
PROSITE profilePS5081110.77463136IPR003657WRKY domain
PfamPF031061.1E-1664133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MASRHQLQTM QFTDPASRSP RPVGGGVHGQ PPPTPMSSPF SSRKPRMQEG HPTCVNLTPI  60
PHTDGHLWRK YGEKKIKNSS FPRRWCKTVA IYRLYYRCSY RDDRNCMATK VVQQENDADP  120
PLYRVTYIHP HTCNPSPPAP TPAHVFTEPP PAKAEVHHAV LFRFSSTAGG HTANNAVHRQ  180
QWQPAAATMA AGAQAQLSMT MSDDEREQPP AAIRSAPPAR RLSMFRAVVD GLRQMRSSAP  240
PTPSSSMVVD DGWDTFSSFD LDTCEFSVDD ELLCGDHMYF PDSMQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997740.0AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613415.20.0probable WRKY transcription factor 32
TrEMBLA0A0E0IQL80.0A0A0E0IQL8_ORYNI; Uncharacterized protein
STRINGONIVA10G05410.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80590.17e-16WRKY DNA-binding protein 66