PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G18150.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 444aa    MW: 45758.9 Da    PI: 5.769
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G18150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35391292101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll+
  ONIVA09G18150.1  39 FLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRLLC 123
                      9*****************************************************************99.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  ONIVA09G18150.1 124 DIHRRK 129
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3831123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5935128IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.86E-3536128IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-203962IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.3E-3239128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MAEQGAGEAD AGGGVPPAAA VMTAAAEALA GQRSLPTPFL TKTYQLVEDP AVDDVISWNE  60
DGSTFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KIVPDRWEFA NDCFRRGEKR  120
LLCDIHRRKV VAAAAAAPPP PSPGMATAAA AVASGAVTVA AAPIPMALPV TRAGSPAHSS  180
EEQVLSSNSG SGEEHRQASG SGSAPGGGGG GSASGGDMGE ENERLRRENA RLTRELGHMK  240
KLCNNILLLM SKYAATQHVE GSAGISSIAN CSGESSEAVP PPPPLPPAIL DLMPSCPALA  300
TAAAAAGLAI DSEPDPSARL FGVSIGLKRT RDDAAAAADE DGGGEDQAEH GGADVKPEAA  360
DPHPAGGGSS TEASPESHPW PIYRPTPMYH AVRPTCNGPD RAGSDQDGSS SSVRSIRMPV  420
HSLVSFTSVL GVSAKNGGDI GRKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-262912811120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1065250.0AK106525.1 Oryza sativa Japonica Group cDNA clone:002-107-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876145.10.0heat stress transcription factor B-2c isoform X1
SwissprotQ652B00.0HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A0E0IMM40.0A0A0E0IMM4_ORYNI; Uncharacterized protein
STRINGONIVA09G18150.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-59HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]