PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G15800.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 358aa MW: 39642.4 Da PI: 9.6124

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G15800.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.6	8e-56	21	151	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL++k+++ +++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ ONIVA09G15800.1 21 LPPGFRFHPTDEELITYYLRQKIADGGFTA-RAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFT 113 79***********************999.89***********99999************************************9 PP NAM 95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + elvg+kktLvfykgrap+gekt+Wvmheyrl ONIVA09G15800.1 114 GqppaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 151 766666677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-64	17	172	IPR003441	NAC domain
PROSITE profile	PS51005	60.863	21	172	IPR003441	NAC domain
Pfam	PF02365	2.4E-29	22	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MAMGMEGSGG GGSAKKKEES LPPGFRFHPT DEELITYYLR QKIADGGFTA RAIAEVDLNK 60 CEPWDLPEKA KMGEKEWYFF SLRDRKYPTG VRTNRATNAG YWKTTGKDKE IFTGQPPATP 120 ELVGMKKTLV FYKGRAPRGE KTNWVMHEYR LHSKSIPKSN KDEWVVCRIF AKTAGVKKYP 180 SNNAHSRSHH PYTLDMVPPL LPALLQQDPF GRGHHPYMNP VDMAELSRFA RGTPGLHPHI 240 QPHPGYINPA APFTLSGLNL NLGSSPAMPP PPPPPPQSIL QAMSMPMNQP STTNQVMVTE 300 QMIPGLANGV IPQGTDGGFT TDVVVGGTGI RYQNLDVEQL VERSWIVLRC EIVRGIGT

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MAMGMEGSGG GGSAKKKEES LPPGFRFHPT DEELITYYLR QKIADGGFTA RAIAEVDLNK  60
CEPWDLPEKA KMGEKEWYFF SLRDRKYPTG VRTNRATNAG YWKTTGKDKE IFTGQPPATP  120
ELVGMKKTLV FYKGRAPRGE KTNWVMHEYR LHSKSIPKSN KDEWVVCRIF AKTAGVKKYP  180
SNNAHSRSHH PYTLDMVPPL LPALLQQDPF GRGHHPYMNP VDMAELSRFA RGTPGLHPHI  240
QPHPGYINPA APFTLSGLNL NLGSSPAMPP PPPPPPQSIL QAMSMPMNQP STTNQVMVTE  300
QMIPGLANGV IPQGTDGGFT TDVVVGGTGI RYQNLDVEQL VERSWIVLRC EIVRGIGT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	20	178	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	20	178	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	20	178	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	20	178	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	20	178	19	174	NAC domain-containing protein 19
3swm_B	2e-55	20	178	19	174	NAC domain-containing protein 19
3swm_C	2e-55	20	178	19	174	NAC domain-containing protein 19
3swm_D	2e-55	20	178	19	174	NAC domain-containing protein 19
3swp_A	2e-55	20	178	19	174	NAC domain-containing protein 19
3swp_B	2e-55	20	178	19	174	NAC domain-containing protein 19
3swp_C	2e-55	20	178	19	174	NAC domain-containing protein 19
3swp_D	2e-55	20	178	19	174	NAC domain-containing protein 19
4dul_A	2e-55	20	178	16	171	NAC domain-containing protein 19
4dul_B	2e-55	20	178	16	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102511	0.0	AK102511.1 Oryza sativa Japonica Group cDNA clone:J033095I08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612624.1	0.0	NAC domain-containing protein 92
Refseq	XP_015612625.1	0.0	NAC domain-containing protein 92
Swissprot	Q9FLJ2	3e-82	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0E0ILR2	0.0	A0A0E0ILR2_ORYNI; Uncharacterized protein
STRING	ONIVA09G15800.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9361	38	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	6e-90	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]