PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA09G10010.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 530aa MW: 52180.4 Da PI: 7.2609 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.8e-12 | 300 | 345 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq ONIVA09G10010.2 300 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 345 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.37E-16 | 293 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.42E-11 | 293 | 348 | No hit | No description |
PROSITE profile | PS50888 | 17.39 | 295 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-15 | 297 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-9 | 300 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-13 | 301 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MQPTTREMQA MAAAAAAGQI SLDDLRNGGG VAANAGGGGG GVHDDFLDQM LSSLPPSAWP 60 DLAAGKAAED DAEGMHHHHH HHQQQFGGPY DESAMLASRL RQHQISGGGG GGGGGAAAVK 120 QMVLQQLADL RQGHHMMLQG LGGRSPAGGG GGGGDGGLLL PLTLGSGGSG GDVQALLKAA 180 AANSAGGGDA GGVYGGGFAG SLHQQQQHFQ PHPQVLINSL ADISHGSPRL KTLKHRPCVC 240 LQTAPTIPTQ SFGGGGGGGG GGTASGGGAA QPQAGAAGGG APAPPRQRVR ARRGQATDPH 300 SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVLS MSRLGGAAAV 360 APLVADMSSE GRGGGAANGG APAAAAAAAG SDSLTVTEQQ VAKLMEEDMG TAMQYLQGKG 420 LCLMPISLAS AISSATCHLR PPVVAAAAAQ QFPAGLGAAA AAAHHHQLSA AAAAAAAMRG 480 HLPGLNADGS VPASPSMSVL TAQSAMANGG GGAADGEGSQ LKDAASVSKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 149 | GGRSPAGGG |
2 | 304 | 309 | RLRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005784 | 0.0 | AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610785.1 | 1e-176 | transcription factor UNE12 isoform X2 | ||||
TrEMBL | A0A0E0IJL0 | 0.0 | A0A0E0IJL0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA09G10010.3 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 1e-45 | LJRHL1-like 1 |