PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G06600.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 366aa MW: 38008 Da PI: 5.4726

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G06600.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.4	8.4e-37	76	175	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC++dC+la+yfpa+++++f n+h+lFG+s+++k+l+++p+e + dam++l++eA+ara+dPv Ga++v+ +l +q+e l+ael ONIVA09G06600.1 76 ACAACKYQRRKCNADCPLARYFPADEQRRFLNAHHLFGVSKIQKTLRDTPPELHADAMQALTFEANARASDPVGGAARVVVELCRQYEMLHAEL 169 7******************************************************************************************* PP DUF260 95 allkee 100 a+++++ ONIVA09G06600.1 170 AAVQHH 175 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.79	75	176	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-33	76	173	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIARSSA SSGGGGAAAP LPPRAPPRVG 60 VGGGGGGGGG VGQSQACAAC KYQRRKCNAD CPLARYFPAD EQRRFLNAHH LFGVSKIQKT 120 LRDTPPELHA DAMQALTFEA NARASDPVGG AARVVVELCR QYEMLHAELA AVQHHLKLCR 180 QQHAAAAAAA ANDQLVANVD PLADPAAEML FAGAVVPNQN DDAMVDAFYA DQQTAGDGDQ 240 EQYLVKDEAL AAQPPPQQPY EYLNYGTAGD EGSSHAWYTG NGGDADASPP MGLSDQLQQC 300 QIGAAPPFDV KPELPATMEH GGSVFVEQPE QKILPAAGSS SSAAAHCQLE LGCSSNAWKV 360 GTHVIN

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIARSSA SSGGGGAAAP LPPRAPPRVG  60
VGGGGGGGGG VGQSQACAAC KYQRRKCNAD CPLARYFPAD EQRRFLNAHH LFGVSKIQKT  120
LRDTPPELHA DAMQALTFEA NARASDPVGG AARVVVELCR QYEMLHAELA AVQHHLKLCR  180
QQHAAAAAAA ANDQLVANVD PLADPAAEML FAGAVVPNQN DDAMVDAFYA DQQTAGDGDQ  240
EQYLVKDEAL AAQPPPQQPY EYLNYGTAGD EGSSHAWYTG NGGDADASPP MGLSDQLQQC  300
QIGAAPPFDV KPELPATMEH GGSVFVEQPE QKILPAAGSS SSAAAHCQLE LGCSSNAWKV  360
GTHVIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-20	72	176	7	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-20	72	176	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611163.2	0.0	protein IAL1
TrEMBL	A0A0E0IIC3	0.0	A0A0E0IIC3_ORYNI; Uncharacterized protein
STRING	ONIVA09G06600.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18293	10	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	2e-29	LOB domain-containing protein 7