PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G05410.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 361aa    MW: 37940.2 Da    PI: 6.5076
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G05410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY841.4e-26125185158
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      +dDg++WrKYGqKe+ g+++pr+YYrCt++   gC+++k+v+r++ed  v++++Y+geH++
  ONIVA09G05410.1 125 VDDGHSWRKYGQKEILGAKHPRGYYRCTHRhsqGCMATKQVQRTDEDAMVFDVIYHGEHTC 185
                      59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-27114186IPR003657WRKY domain
PROSITE profilePS5081121.884120183IPR003657WRKY domain
SuperFamilySSF1182901.57E-24121185IPR003657WRKY domain
SMARTSM007743.4E-39125187IPR003657WRKY domain
PfamPF031063.8E-26126185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MESMEGNGGG RLVVTELSHI KELVRQLEGH LGGSGSPDLC KHLASQIFSV TERSIGMIRS  60
GHFDGHRKRS AAAVAAGDLD SATPSPLSDV SDLPFKATKK RKTSTEKKRH QIRVSSTGGV  120
ENPPVDDGHS WRKYGQKEIL GAKHPRGYYR CTHRHSQGCM ATKQVQRTDE DAMVFDVIYH  180
GEHTCVHKAV AAGAGKPETE TDTNAAAESR LHELSSGLTV KIEGLTAPPQ QQQGGGGWNA  240
MPPFCLSSPV SGLAPPDQHN PFSAPSTPEN RLAAAASSAA SPATSDSMAA PPFHQAAAAG  300
GDAAWRDAEL QEVVSALVAA TTATATAQPA PATAMVDADL SALDAFEFDP GFTIDITSFF  360
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22125185868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769300.0AY676930.1 Oryza sativa (indica cultivar-group) transcription factor WRKY74 (WRKY74) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651250.10.0probable WRKY transcription factor 30
TrEMBLA0A0E0IHV50.0A0A0E0IHV5_ORYNI; Uncharacterized protein
STRINGONIVA09G05410.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-32WRKY DNA-binding protein 46