PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G04150.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 614aa    MW: 65868 Da    PI: 5.9485
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G04150.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.79.7e-28525577254
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYeg 54 
                      d g++WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+ +d+++v++tY g
  ONIVA09G04150.2 525 DAGFRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERALHDTRAVITTYAG 577
                      569************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF009991.7E-2145216IPR006153Cation/H+ exchanger
PRINTSPR010843.8E-994108IPR004709Na+/H+ exchanger
PRINTSPR010843.8E-9109117IPR004709Na+/H+ exchanger
PRINTSPR010843.8E-9149159IPR004709Na+/H+ exchanger
PfamPF009996.8E-6276356IPR006153Cation/H+ exchanger
Gene3DG3DSA:2.20.25.804.1E-27506577IPR003657WRKY domain
PROSITE profilePS5081130.113519584IPR003657WRKY domain
SuperFamilySSF1182901.02E-22520577IPR003657WRKY domain
SMARTSM007747.8E-30524583IPR003657WRKY domain
PfamPF031065.6E-20527577IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006885Biological Processregulation of pH
GO:0035725Biological Processsodium ion transmembrane transport
GO:1902600Biological Processhydrogen ion transmembrane transport
GO:0005768Cellular Componentendosome
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0015385Molecular Functionsodium:proton antiporter activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MALELSLVSA SPPGGLAASP PPPAAIPGKE QQVAGVGILL QISMLVLSFV LGHVLRRHRF  60
YYLPEASASL LIGLVVGGLA NISNTETNTR TQSGFSLSPK PFFANFGAIV TFAILGTFVA  120
SVVTGVLVYL GGLTFLMYKL PFVECLMFGA LISATDPVTV LSIFQELGTD VNLYALVFGE  180
SVLNDAMAIS LYRTMSLVRS QAAAGENFFM MVFQFLETFV GSLSSEGLGL SGIVSILFTG  240
MVMKHYTFSN LSNNSQRFVS AFFHLLSSLA ETFVAVNVFS CAYLVNMSRP EHRRIPLKHQ  300
KALWFSGLRG AMAFALALQS ANELPGGHGK TIFTTTTAIV VLTVLLIGGS TGTMLEALDV  360
IGDENRSIEN YDDNNGYIPP TYEEGSSSGG GLRMKLKEFH KSTTSFTALD RNYLTPFFTS  420
QTDEDDDVFV LRNTSSGCAA AAACADQYSA ATPDNSSVTF GDDEADNESH SSEGYEPEAK  480
CWKEDADNEG SSGGMGGGAG GKPVRKPRLV VHTLSDIDIN IDILDAGFRW RKYGQKVVKG  540
NPNPRSYYKC TTVGCPVRKH VERALHDTRA VITTYAGAVV QRDPAVGSAN GAGAAFQRTK  600
DKPRDDLFVE SLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-255215771470Probable WRKY transcription factor 4
2lex_A1e-255215771470Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in trafficking to the vacuole. Required for cell proliferation and cell expansion, but not for cell differentiation. May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity (By similarity). {ECO:0000250, ECO:0000269|PubMed:21278129}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5314340.0AB531434.1 Oryza sativa Japonica Group OsNHX5 mRNA for sodium/proton antiporter, complete cds.
GenBankAK0721140.0AK072114.1 Oryza sativa Japonica Group cDNA clone:J013124C16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612242.10.0sodium/hydrogen exchanger 6
SwissprotQ8RWU60.0NHX6_ARATH; Sodium/hydrogen exchanger 6
TrEMBLA0A0E0IHG20.0A0A0E0IHG2_ORYNI; Uncharacterized protein
STRINGONIVA09G04150.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-35WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Yokoi S, et al.
    Differential expression and function of Arabidopsis thaliana NHX Na+/H+ antiporters in the salt stress response.
    Plant J., 2002. 30(5): p. 529-39
    [PMID:12047628]
  2. Zhu W,Brendel V
    Identification, characterization and molecular phylogeny of U12-dependent introns in the Arabidopsis thaliana genome.
    Nucleic Acids Res., 2003. 31(15): p. 4561-72
    [PMID:12888517]
  3. Cellier F, et al.
    Characterization of AtCHX17, a member of the cation/H+ exchangers, CHX family, from Arabidopsis thaliana suggests a role in K+ homeostasis.
    Plant J., 2004. 39(6): p. 834-46
    [PMID:15341627]
  4. Sze H, et al.
    Expression patterns of a novel AtCHX gene family highlight potential roles in osmotic adjustment and K+ homeostasis in pollen development.
    Plant Physiol., 2004. 136(1): p. 2532-47
    [PMID:15347787]
  5. Bassil E, et al.
    The Arabidopsis intracellular Na+/H+ antiporters NHX5 and NHX6 are endosome associated and necessary for plant growth and development.
    Plant Cell, 2011. 23(1): p. 224-39
    [PMID:21278129]
  6. Bassil E, et al.
    The Arabidopsis Na+/H+ antiporters NHX1 and NHX2 control vacuolar pH and K+ homeostasis to regulate growth, flower development, and reproduction.
    Plant Cell, 2011. 23(9): p. 3482-97
    [PMID:21954467]
  7. Reguera M, et al.
    pH Regulation by NHX-Type Antiporters Is Required for Receptor-Mediated Protein Trafficking to the Vacuole in Arabidopsis.
    Plant Cell, 2015. 27(4): p. 1200-17
    [PMID:25829439]
  8. Ashnest JR,Huynh DL,Dragwidge JM,Ford BA,Gendall AR
    Arabidopsis Intracellular NHX-Type Sodium-Proton Antiporters are Required for Seed Storage Protein Processing.
    Plant Cell Physiol., 2015. 56(11): p. 2220-33
    [PMID:26416852]
  9. Wang L,Wu X,Liu Y,Qiu QS
    AtNHX5 and AtNHX6 Control Cellular K+ and pH Homeostasis in Arabidopsis: Three Conserved Acidic Residues Are Essential for K+ Transport.
    PLoS ONE, 2015. 10(12): p. e0144716
    [PMID:26650539]
  10. Qiu QS
    Plant endosomal NHX antiporters: Activity and function.
    Plant Signal Behav, 2016. 11(5): p. e1147643
    [PMID:26890367]
  11. Wu X,Ebine K,Ueda T,Qiu QS
    AtNHX5 and AtNHX6 Are Required for the Subcellular Localization of the SNARE Complex That Mediates the Trafficking of Seed Storage Proteins in Arabidopsis.
    PLoS ONE, 2016. 11(3): p. e0151658
    [PMID:26986836]
  12. Qiu QS
    AtNHX5 and AtNHX6: Roles in protein transport.
    Plant Signal Behav, 2016. 11(6): p. e1184810
    [PMID:27175802]
  13. Brumbarova T,Ivanov R
    Differential Gene Expression and Protein Phosphorylation as Factors Regulating the State of the Arabidopsis SNX1 Protein Complexes in Response to Environmental Stimuli.
    Front Plant Sci, 2016. 7: p. 1456
    [PMID:27725825]
  14. Fan L, et al.
    Na+ ,K+ /H+ antiporters regulate the pH of endoplasmic reticulum and auxin-mediated development.
    Plant Cell Environ., 2018. 41(4): p. 850-864
    [PMID:29360148]