PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA09G03360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 292aa MW: 33325.4 Da PI: 6.3659 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 55.2 | 1.4e-17 | 125 | 189 | 3 | 58 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST......TEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp......kvveitYegeHnh 58 Dgy+WrKYGqK++ +++++rsYYrCt + gC+++k v++ ++ + k+ ++ Y +H++ ONIVA09G03360.1 125 DGYEWRKYGQKSISKTKHSRSYYRCTNQkgqGCMATKTVQQIENGNssnsvvKLYNVDYFCKHTC 189 9**************************99999******998775431111112334556666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-19 | 109 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-18 | 118 | 191 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.0E-25 | 123 | 191 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.043 | 125 | 165 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-19 | 125 | 190 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MSANIESFCC IDHRMIIQEM KREHGLLIDL KNHIIPILRF NNVQADHIVH AFDDILCCSN 60 GIISKIQAEV CDGGNSDPGI DKGNGRNNAL DNMKVFIEDG TVTKKKRRKN AQHTGSVVTA 120 TPDYDGYEWR KYGQKSISKT KHSRSYYRCT NQKGQGCMAT KTVQQIENGN SSNSVVKLYN 180 VDYFCKHTCK VSNEMVCPDI VETDSPKYSS INDKYASTRL TNHSDDHQPN NEMKPENFFA 240 VPDMSLFSEN MWDIMFEDVT MNSTFSLEQE AKDSWIKHQQ DSTIHLWADE LC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 107 | KKKRR |
2 | 103 | 108 | KKKRRK |
3 | 104 | 108 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005829 | 0.0 | AP005829.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1008E06. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611479.1 | 0.0 | disease resistance protein RRS1 isoform X1 | ||||
TrEMBL | A0A0E0IH76 | 0.0 | A0A0E0IH76_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA09G03360.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19315 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 1e-15 | WRKY DNA-binding protein 38 |