PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G23730.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 1115aa MW: 123272 Da PI: 6.9763 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.3 | 2.6e-22 | 99 | 200 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++ ONIVA08G23730.3 99 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RD 188 99*****************************954.4444.49************************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++l+++++r+ ONIVA08G23730.3 189 AKQQLLLGIRRA 200 677789999997 PP | |||||||
2 | Auxin_resp | 117.2 | 1.4e-38 | 225 | 308 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s F+++YnPrastseFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wr+++ ONIVA08G23730.3 225 AAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQ 308 79**********************************9********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.84E-42 | 89 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-40 | 92 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.54E-18 | 98 | 188 | No hit | No description |
Pfam | PF02362 | 1.7E-20 | 99 | 200 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.646 | 99 | 201 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-20 | 99 | 201 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.1E-33 | 225 | 308 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.6E-10 | 955 | 1050 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.775 | 965 | 1049 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.61E-7 | 977 | 1044 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1115 aa Download sequence Send to blast |
MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQADPDTD 60 EVYARMTLQP VSNVTQCDKE TLLASELALK QTRPQTEFFC KTLTASDTST HGGFSVPRRA 120 AERIFPRLDF SMQPPAQELQ ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG 180 DSVLFIRDAK QQLLLGIRRA NRQPTNLSSS VLSSDSMHIG ILAAAAHAAA NNSQFTIYYN 240 PRASTSEFVI PFAKYQKAVY GNQLSLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK 300 TSHWRNIQVA WDEAAPTERR TRVSLWEIEP IIAPFFIYPS PLFTAKRPRL PGMTDDETEM 360 DGLLKRAMPW VGEEICKKDL NIQNSVVPGL NLAQWMNMQH SSSLPGTVVQ PELLNSLSGK 420 PVQNLAAADL SRQISFHPQF LQQNNIQFNT ALVPQQNQQT EQLAKVIPTP NQLGSVIIPQ 480 KVVQDCNSEQ RQHVVTQPVQ GSQPNINIPQ PQLVVQAQLQ QPQVILQAQL QQPQVVVQAQ 540 LQQTQPSVQS HTVLQGGLQQ IQLLQQQQPH VQHQQIPQQL HHHQQQTQQL QPVQQVQQSV 600 QEHQQIKIQP VHVSMDASMN TQVADHQMKL QLLKALQPQQ PLISEQQKML LDLQQQVINS 660 QSAPQQCVQV TNQAISLHNS NTIQYPTQQK VQSHQVQDLT GNVIPNSKSD IATSMGASSL 720 HVAGGRQLLK TDDVPSTSTS PSTNSNPVLL QSIPSSSKNQ SLTTAGKTSQ SSVVLGPTIE 780 QDTKPYQNVK QTVMIPKTTE QRPATGQDCI NNNPQMDYLD TSSSATSVCL SQADGSLQQN 840 FPPSSFHQHH LLKDTVPDSE FEVTDPRNNL LFGVNIDGQL GLPLNADLLA NDIGTDKYMD 900 QLPGNGISNF ISSKDSQQEL SSSMISHSFG VADMAFNSID SAINDTPFLN RNSRSAAGPA 960 HQRMRTYTKV HKRGAVGRSI DINRYSGYDE LKHDVARMFG IEGQLGDQNR VGWKLVYEDH 1020 EKDVLLVGDD PWEDFVKCVR CIRILSPQEE MQMRLVGDFG DSFLPNQACS SSDGAHSSRR 1080 FFVAAGAGAA ASPVDSLAGG GWTGRNLRST LSPRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-139 | 22 | 329 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071297 | 0.0 | AB071297.1 Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649755.1 | 0.0 | auxin response factor 21 | ||||
Swissprot | Q6YZW0 | 0.0 | ARFU_ORYSJ; Auxin response factor 21 | ||||
TrEMBL | A0A0E0IEP5 | 0.0 | A0A0E0IEP5_ORYNI; Auxin response factor | ||||
STRING | ORUFI08G23260.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Publications ? help Back to Top | |||
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