PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G23730.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1092aa    MW: 120834 Da    PI: 6.8331
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G23730.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-22132233199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  ONIVA08G23730.2 132 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RD 221
                      99*****************************954.4444.49************************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                       +++l+++++r+
  ONIVA08G23730.2 222 AKQQLLLGIRRA 233
                      677789999997 PP
2Auxin_resp867.6e-29258335179
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79 
                      aahaa+++s F+++YnPrastseFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt+++  +    r + S W
  ONIVA08G23730.2 258 AAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITAAPT--ERRTRVSLW 335
                      79**********************************9***************************99876..334555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-42122261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-40125247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-18131221No hitNo description
SMARTSM010191.5E-20132234IPR003340B3 DNA binding domain
PROSITE profilePS5086311.646132234IPR003340B3 DNA binding domain
PfamPF023621.7E-20132233IPR003340B3 DNA binding domain
PfamPF065076.4E-24258335IPR010525Auxin response factor
PfamPF023094.4E-109641059IPR033389AUX/IAA domain
PROSITE profilePS5174526.7759741058IPR000270PB1 domain
SuperFamilySSF542774.41E-79861053No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1092 aa     Download sequence    Send to blast
MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQVAASMR  60
KDADAQIPSY PNLPSKLICI LHSVTMLADP DTDEVYARMT LQPVSNVTQC DKETLLASEL  120
ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ ELQARDLHDN  180
VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DAKQQLLLGI RRANRQPTNL  240
SSSVLSSDSM HIGILAAAAH AAANNSQFTI YYNPRASTSE FVIPFAKYQK AVYGNQLSLG  300
MRFRMMFETE ESGTRRYMGT ITAAPTERRT RVSLWEIEPI IAPFFIYPSP LFTAKRPRLP  360
GMTDDETEMD GLLKRAMPWV GEEICKKDLN IQNSVVPGLN LAQWMNMQHS SSLPGTVVQP  420
ELLNSLSGKP VQNLAAADLS RQISFHPQFL QQNNIQFNTA LVPQQNQQTE QLAKVIPTPN  480
QLGSVIIPQK VVQDCNSEQR QHVVTQPVQG SQPNINIPQP QLVVQAQLQQ PQVILQAQLQ  540
QPQVVVQAQL QQTQPSVQSH TVLQGGLQQI QLLQQQQPHV QHQQIPQQLH HHQQQTQQLQ  600
PVQQVQQSVQ EHQQIKIQPV HVSMDASMNT QVADHQMKLQ LLKALQPQQP LISEQQKMLL  660
DLQQQVINSQ SAPQQCVQVT NQAISLHNSN TIQYPTQQKV QSHQVQDLTG NVIPNSKSDI  720
ATSMGASSLH VAGGRQLLKT DDVPSTSTSP STNSNPVLLQ SIPSSSKNQS LTTAGKTSQS  780
SVVLGPTIEQ DTKPYQNVKQ TVMIPKTTEQ RPATGQDCIN NNPQMDYLDT SSSATSVCLS  840
QADGSLQQNF PPSSFHQHHL LKDTVPDSEF EVTDPRNNLL FGVNIDGQLG LPLNADLLAN  900
DIGTDKYMDQ LPGNGISNFI SSKDSQQELS SSMISHSFGV ADMAFNSIDS AINDTPFLNR  960
NSRSAAGPAH QRMRTYTKVH KRGAVGRSID INRYSGYDEL KHDVARMFGI EGQLGDQNRV  1020
GWKLVYEDHE KDVLLVGDDP WEDFVKCVRC IRILSPQEEM QMRLVGDFGD SFLPNQACSS  1080
SDGGHPWRIT GD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1402233851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712970.0AB071297.1 Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649755.10.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A0E0IEP40.0A0A0E0IEP4_ORYNI; Auxin response factor
STRINGONIVA08G23730.10.0(Oryza nivara)
STRINGOBART08G20780.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]