PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G22710.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 339aa MW: 36900.7 Da PI: 7.2318

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G22710.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.3	1.2e-52	25	155	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv++yL++kv + + v i+evd++++ePw+Lp++++ +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+ ONIVA08G22710.1 25 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-GVdIAEVDLNRCEPWELPEAARMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVV 117 79***********************888.455***********9888999********************************** PP NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g+l+g+kktLvfykgrap+gekt+Wv+heyrl ONIVA08G22710.1 118 AAaagGGALIGMKKTLVFYKGRAPRGEKTKWVLHEYRL 155 998988999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-63	14	178	IPR003441	NAC domain
PROSITE profile	PS51005	59.207	25	178	IPR003441	NAC domain
Pfam	PF02365	3.6E-27	26	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MGDALWEMLG EEMAAAAAAA GEHGLPPGFR FHPTDEELVT FYLAAKVFNG ACCGGVDIAE 60 VDLNRCEPWE LPEAARMGEK EWYFFSLRDR KYPTGLRTNR ATGAGYWKAT GKDREVVAAA 120 AGGGALIGMK KTLVFYKGRA PRGEKTKWVL HEYRLDGDFA AARRSTKEEW VICRIFHKVG 180 DQYSKLMMMK SPASYYLPVS HHHPSSIFHD LPPVPFPNPS LVPFHHDLPT SFHPPLLQHS 240 HANSKNSSSN NGGFVFPNEP NTTNSSDNHI SCNGAMAAAA AAFPSFSCVS TVTGKGGPPA 300 QLGVNAGQQE PPPPTWMDAY LQHSGFIYEM GPPAVPRGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-49	25	178	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-49	25	178	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-49	25	178	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-49	25	178	17	165	NO APICAL MERISTEM PROTEIN
4dul_A	9e-49	25	178	17	165	NAC domain-containing protein 19
4dul_B	9e-49	25	178	17	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00241	DAP	Transfer from AT1G76420	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006049	0.0	AP006049.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648828.1	0.0	protein CUP-SHAPED COTYLEDON 3
Swissprot	Q9S851	2e-86	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A0E0IEC1	0.0	A0A0E0IEC1_ORYNI; Uncharacterized protein
STRING	ONIVA08G22710.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11237	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-81	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]