PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G22410.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 404aa    MW: 41945.6 Da    PI: 8.233
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G22410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13335380655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  ONIVA08G22410.1 335 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 380
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281329379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-16332389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-12333384No hitNo description
Gene3DG3DSA:4.10.280.103.2E-15334391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13335385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10335380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPAMS SSGLLRYRSA PSTLLAEFCD DFLPPAAAPR AASPDADNVF  60
SRFLADHQIR DKSPPATAAA AAAAAAAHFP DDPTMATQHH HQQQMMFQHH PQQMASVEGL  120
YRTVSSTGID AATAAANAAG GGGGGLLRQS SSPAGFLNHL NMDNGYGSML RAGMAAAGGG  180
GGVGFRNGAN AAAAADSPGG SGGRLKGQLS FSSRQGSLMS QISEMDSEEL GGSSPEGAGG  240
GGGGGGRGYL SGYPMSSGWE ESSLMSDTNI SGVKRQRDSS EPSQNGGGGG GGLAHQFSLP  300
KTSSEMAAIE KFLQFQDAVP CKIRAKRGCA THPRSIAERV RRTRISERIR KLQELVPNMD  360
KQTNTADMLD LAVDYIKDLQ KQVKGLNDSR ANCTCSAKHQ QYSG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001060.0AK100106.1 Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650699.10.0transcription factor bHLH130
TrEMBLA0A0E0IE740.0A0A0E0IE74_ORYNI; Uncharacterized protein
STRINGONIVA08G22410.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-44bHLH family protein