PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G21410.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 656aa    MW: 71360.3 Da    PI: 7.3865
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G21410.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30265320259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vk+se+prsYY+Ct+++C vkk ve+s+ d++++ei+Y+g+Hnh+
  ONIVA08G21410.3 265 EDGYNWRKYGQKQVKNSEHPRSYYKCTFTNCAVKK-VECSQ-DGQITEIVYKGSHNHP 320
                      8*******************************998.****9.***************7 PP
2WRKY105.52.8e-33475533159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+vers++d k v++tYeg+Hnhe
  ONIVA08G21410.3 475 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERSSHDLKSVITTYEGKHNHE 533
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-26260322IPR003657WRKY domain
SuperFamilySSF1182901.11E-23262322IPR003657WRKY domain
SMARTSM007749.8E-34264321IPR003657WRKY domain
PROSITE profilePS5081120.335265322IPR003657WRKY domain
PfamPF031061.8E-22265320IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-37460535IPR003657WRKY domain
SuperFamilySSF1182904.32E-29467535IPR003657WRKY domain
PROSITE profilePS5081137.597470535IPR003657WRKY domain
SMARTSM007741.7E-38475534IPR003657WRKY domain
PfamPF031062.6E-25476533IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MDDWMLPSPS PRTLMSSFLN EEFSFGPFSD IFCDNGSNKH QDGLGKSKAF IDSSREETAQ  60
LAKKFESNLF GANQKSSSNG CLSERMAART GFGVLKIDTS RVGYSTPIRS PIPPGVSPRE  120
LLESPVFLPN AIAQPSPTTG KLPFLMHSNV KPSIPKKTED ETRHDRVFFF QPILGSKPPT  180
CPVAEKGFSV NHQNQPSVTD NHQELSLQSS STAAKDFTSA TIVKPKTSDS MLDNDDHPSP  240
ANDQEENATN KNEEYSSDLI ITPAEDGYNW RKYGQKQVKN SEHPRSYYKC TFTNCAVKKV  300
ECSQDGQITE IVYKGSHNHP LPPSNRRPNV PFSHFNDLRD DHSEKFGSKS GQATATSWEN  360
AANGHLQDVG SEVLTKLSAS LTTTEHAEKS VMDKQEAVDI SSTLSNEEDD RVTHRAPLSL  420
GFDANDDDVE HKRRKMDVYA ATSTSTNAID IGAVASRAIR EPRVVVQTTS EVDILDDGYR  480
WRKYGQKVVK GNPNPRSYYK CTHPGCSVRK HVERSSHDLK SVITTYEGKH NHEVPAASSG  540
SAAAPQATNG LLHRRPEPAQ GGGGGSLAQF GYGSAGHRPA EQFGAAAAGF SFGMLPRSIA  600
TPAPSPAIAV PAMQGYPGLV LPRGEMKVNL LPQSGNAGAA ASQQLMGRLP KQHPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36265536878Probable WRKY transcription factor 4
2lex_A1e-36265536878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0655180.0AK065518.1 Oryza sativa Japonica Group cDNA clone:J013025I24, full insert sequence.
GenBankAY8706100.0AY870610.1 Oryza sativa (japonica cultivar-group) WRKY30 mRNA, complete cds.
GenBankCT8288680.0CT828868.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209L14, full insert sequence.
GenBankCT8288690.0CT828869.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI216M15, full insert sequence.
GenBankDQ2981800.0DQ298180.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650158.10.0probable WRKY transcription factor 2
RefseqXP_015650159.10.0probable WRKY transcription factor 2
RefseqXP_015650160.10.0probable WRKY transcription factor 2
RefseqXP_015650162.10.0probable WRKY transcription factor 2
RefseqXP_015650163.10.0probable WRKY transcription factor 2
RefseqXP_015650164.10.0probable WRKY transcription factor 2
RefseqXP_015650165.10.0probable WRKY transcription factor 2
RefseqXP_025883130.10.0probable WRKY transcription factor 2
RefseqXP_025883131.10.0probable WRKY transcription factor 2
TrEMBLA0A0E0IDU60.0A0A0E0IDU6_ORYNI; Uncharacterized protein
STRINGONIVA08G21410.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-110WRKY DNA-binding protein 2