PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G21410.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 666aa    MW: 72371.4 Da    PI: 7.2702
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G21410.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30275330259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vk+se+prsYY+Ct+++C vkk ve+s+ d++++ei+Y+g+Hnh+
  ONIVA08G21410.2 275 EDGYNWRKYGQKQVKNSEHPRSYYKCTFTNCAVKK-VECSQ-DGQITEIVYKGSHNHP 330
                      8*******************************998.****9.***************7 PP
2WRKY105.52.8e-33485543159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+vers++d k v++tYeg+Hnhe
  ONIVA08G21410.2 485 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERSSHDLKSVITTYEGKHNHE 543
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-26270332IPR003657WRKY domain
SuperFamilySSF1182901.14E-23272332IPR003657WRKY domain
SMARTSM007749.8E-34274331IPR003657WRKY domain
PROSITE profilePS5081120.335275332IPR003657WRKY domain
PfamPF031061.9E-22275330IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-37470545IPR003657WRKY domain
SuperFamilySSF1182904.45E-29477545IPR003657WRKY domain
PROSITE profilePS5081137.597480545IPR003657WRKY domain
SMARTSM007741.7E-38485544IPR003657WRKY domain
PfamPF031062.6E-25486543IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MDGTNNHGAL MDDWMLPSPS PRTLMSSFLN EEFSFGPFSD IFCDNGSNKH QDGLGKSKAF  60
IDSSREETAQ LAKKFESNLF GANQKSSSNG CLSERMAART GFGVLKIDTS RVGYSTPIRS  120
PIPPGVSPRE LLESPVFLPN AIAQPSPTTG KLPFLMHSNV KPSIPKKTED ETRHDRVFFF  180
QPILGSKPPT CPVAEKGFSV NHQNQPSVTD NHQELSLQSS STAAKDFTSA TIVKPKTSDS  240
MLDNDDHPSP ANDQEENATN KNEEYSSDLI ITPAEDGYNW RKYGQKQVKN SEHPRSYYKC  300
TFTNCAVKKV ECSQDGQITE IVYKGSHNHP LPPSNRRPNV PFSHFNDLRD DHSEKFGSKS  360
GQATATSWEN AANGHLQDVG SEVLTKLSAS LTTTEHAEKS VMDKQEAVDI SSTLSNEEDD  420
RVTHRAPLSL GFDANDDDVE HKRRKMDVYA ATSTSTNAID IGAVASRAIR EPRVVVQTTS  480
EVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTHPGCSVRK HVERSSHDLK SVITTYEGKH  540
NHEVPAASSG SAAAPQATNG LLHRRPEPAQ GGGGGSLAQF GYGSAGHRPA EQFGAAAAGF  600
SFGMLPRSIA TPAPSPAIAV PAMQGYPGLV LPRGEMKVNL LPQSGNAGAA ASQQLMGRLP  660
KQHPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36275546878Probable WRKY transcription factor 4
2lex_A1e-36275546878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0655180.0AK065518.1 Oryza sativa Japonica Group cDNA clone:J013025I24, full insert sequence.
GenBankAY8706100.0AY870610.1 Oryza sativa (japonica cultivar-group) WRKY30 mRNA, complete cds.
GenBankCT8288680.0CT828868.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209L14, full insert sequence.
GenBankCT8288690.0CT828869.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI216M15, full insert sequence.
GenBankDQ2981800.0DQ298180.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650158.10.0probable WRKY transcription factor 2
RefseqXP_015650159.10.0probable WRKY transcription factor 2
RefseqXP_015650160.10.0probable WRKY transcription factor 2
RefseqXP_015650162.10.0probable WRKY transcription factor 2
RefseqXP_015650163.10.0probable WRKY transcription factor 2
RefseqXP_015650164.10.0probable WRKY transcription factor 2
RefseqXP_015650165.10.0probable WRKY transcription factor 2
RefseqXP_025883130.10.0probable WRKY transcription factor 2
RefseqXP_025883131.10.0probable WRKY transcription factor 2
TrEMBLA0A0E0IDU60.0A0A0E0IDU6_ORYNI; Uncharacterized protein
STRINGONIVA08G21410.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-112WRKY DNA-binding protein 2