PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G21410.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 642aa    MW: 69732.4 Da    PI: 7.5416
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G21410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30251306259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vk+se+prsYY+Ct+++C vkk ve+s+ d++++ei+Y+g+Hnh+
  ONIVA08G21410.1 251 EDGYNWRKYGQKQVKNSEHPRSYYKCTFTNCAVKK-VECSQ-DGQITEIVYKGSHNHP 306
                      8*******************************998.****9.***************7 PP
2WRKY105.52.7e-33461519159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+vers++d k v++tYeg+Hnhe
  ONIVA08G21410.1 461 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERSSHDLKSVITTYEGKHNHE 519
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-26246308IPR003657WRKY domain
SuperFamilySSF1182901.07E-23248308IPR003657WRKY domain
SMARTSM007749.8E-34250307IPR003657WRKY domain
PfamPF031061.8E-22251306IPR003657WRKY domain
PROSITE profilePS5081120.335251308IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-37446521IPR003657WRKY domain
SuperFamilySSF1182904.18E-29453521IPR003657WRKY domain
PROSITE profilePS5081137.597456521IPR003657WRKY domain
SMARTSM007741.7E-38461520IPR003657WRKY domain
PfamPF031062.5E-25462519IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MSSFLNEEFS FGPFSDIFCD NGSNKHQDGL GKSKAFIDSS REETAQLAKK FESNLFGANQ  60
KSSSNGCLSE RMAARTGFGV LKIDTSRVGY STPIRSPIPP GVSPRELLES PVFLPNAIAQ  120
PSPTTGKLPF LMHSNVKPSI PKKTEDETRH DRVFFFQPIL GSKPPTCPVA EKGFSVNHQN  180
QPSVTDNHQE LSLQSSSTAA KDFTSATIVK PKTSDSMLDN DDHPSPANDQ EENATNKNEE  240
YSSDLIITPA EDGYNWRKYG QKQVKNSEHP RSYYKCTFTN CAVKKVECSQ DGQITEIVYK  300
GSHNHPLPPS NRRPNVPFSH FNDLRDDHSE KFGSKSGQAT ATSWENAANG HLQDVGSEVL  360
TKLSASLTTT EHAEKSVMDK QEAVDISSTL SNEEDDRVTH RAPLSLGFDA NDDDVEHKRR  420
KMDVYAATST STNAIDIGAV ASRAIREPRV VVQTTSEVDI LDDGYRWRKY GQKVVKGNPN  480
PRSYYKCTHP GCSVRKHVER SSHDLKSVIT TYEGKHNHEV PAASSGSAAA PQATNGLLHR  540
RPEPAQGGGG GSLAQFGYGS AGHRPAEQFG AAAAGFSFGM LPRSIATPAP SPAIAVPAMQ  600
GYPGLVLPRG EMKVNLLPQS GNAGAAASQQ LMGRLPKQHP QM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36251522878Probable WRKY transcription factor 4
2lex_A1e-36251522878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0655180.0AK065518.1 Oryza sativa Japonica Group cDNA clone:J013025I24, full insert sequence.
GenBankAY8706100.0AY870610.1 Oryza sativa (japonica cultivar-group) WRKY30 mRNA, complete cds.
GenBankCT8288680.0CT828868.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209L14, full insert sequence.
GenBankCT8288690.0CT828869.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI216M15, full insert sequence.
GenBankDQ2981800.0DQ298180.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650158.10.0probable WRKY transcription factor 2
RefseqXP_015650159.10.0probable WRKY transcription factor 2
RefseqXP_015650160.10.0probable WRKY transcription factor 2
RefseqXP_015650162.10.0probable WRKY transcription factor 2
RefseqXP_015650163.10.0probable WRKY transcription factor 2
RefseqXP_015650164.10.0probable WRKY transcription factor 2
RefseqXP_015650165.10.0probable WRKY transcription factor 2
RefseqXP_025883130.10.0probable WRKY transcription factor 2
RefseqXP_025883131.10.0probable WRKY transcription factor 2
TrEMBLA0A0E0IDU50.0A0A0E0IDU5_ORYNI; Uncharacterized protein
STRINGONIVA08G21410.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-107WRKY DNA-binding protein 2