PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G18580.1 | ||||||||
Common Name | N26-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 373aa MW: 39059.7 Da PI: 7.5728 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.4 | 3.1e-07 | 205 | 227 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H ONIVA08G18580.1 205 HYCQVCGKGFKRDANLRMHMRAH 227 68*******************99 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00034 | 291 | 314 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ Cg k F s+L++H + + ONIVA08G18580.1 291 YVCGRCGgKQFAVLSDLRTHEKHC 314 9*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00018 | 0 | 182 | 194 | IPR018247 | EF-Hand 1, calcium-binding site |
SuperFamily | SSF57667 | 4.85E-6 | 204 | 231 | No hit | No description |
SMART | SM00355 | 0.0034 | 205 | 227 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.653 | 205 | 232 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.2E-6 | 205 | 231 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 207 | 227 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 253 | 286 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 30 | 291 | 313 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MNPQEFQFFQ GVEQEMLLLS HGGGGAAAAA SDDVLAYHVG VLRDKVQQLE PLVGMVVVSP 60 AAPHGQLRRD AAAMAASSAC SVLQEITAAA SAVAHRLEQA SAASSASFRR GVAFADDAHA 120 AGGEQMFAAG AHGGGQGGDD EAGASLFHHH GPPAVGAPTV FRAGATTTAA ASSSGGGDDD 180 GDGDGDGEVD VVELEASYLL ARYTHYCQVC GKGFKRDANL RMHMRAHGDE YKTAAALTST 240 GAGMRAAARR CSYSCPAEGC RWNRRHPRFQ ALKSVVCAKN HYRRSHCPKM YVCGRCGGKQ 300 FAVLSDLRTH EKHCGELRWL CSCGTFFSRK DKLMGHVALF AAGHAPVPVA PEASPSTTTT 360 GTTTDRSRTG LID |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL442113 | 0.0 | AL442113.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0806H05, complete sequence. | |||
GenBank | CT837928 | 0.0 | CT837928.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123A12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635006.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A0E0ICV4 | 0.0 | A0A0E0ICV4_ORYNI; ZOS4 | ||||
STRING | ONIVA08G18580.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7441 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 8e-79 | C2H2 family protein |