PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G13920.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 336aa    MW: 35471.5 Da    PI: 6.8299
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G13920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY863.3e-27130190259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqK++ g+++pr+YYrCt++   gC+++k+v+r+++d ++++++Y+geH+++
  ONIVA08G13920.1 130 DDGHSWRKYGQKDILGAKHPRGYYRCTHRntqGCTATKQVQRTDDDASLFDVVYHGEHTCR 190
                      8***************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-28124190IPR003657WRKY domain
PROSITE profilePS5081122.079124187IPR003657WRKY domain
SuperFamilySSF1182906.28E-25128190IPR003657WRKY domain
SMARTSM007741.1E-39129191IPR003657WRKY domain
PfamPF031061.2E-26130190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEGIVDGSGA QLVVAELVRV QGLLRQLEAH LSAPCSVELC RGLVAQIVAL TDRSIGIATR  60
SFSSASGGGA HFADTAPPMP ALTSCTPSPL SDGSDHQPFR TTNAKKRKTT ARWTSQVRVS  120
AAGGAEGPAD DGHSWRKYGQ KDILGAKHPR GYYRCTHRNT QGCTATKQVQ RTDDDASLFD  180
VVYHGEHTCR PGAASAAAAK RPHAQTLLQS LSASLTVNTD TNTPLTPENR APAPPLQQQQ  240
QQQSVSASPV ASDSYGLGGA GYGDWRCCDG DLQEVVSALA TVTSAPDHAA MDAADFMSYC  300
FDFDPAVYGG IIKLFNTIKP LALTDEQRTQ GCSSPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-21130190969OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116060.0AK111606.1 Oryza sativa Japonica Group cDNA clone:J013102P22, full insert sequence.
GenBankAY6769310.0AY676931.1 Oryza sativa (indica cultivar-group) transcription factor WRKY69 (WRKY69) mRNA, complete cds.
GenBankHQ8588350.0HQ858835.1 Oryza sativa Japonica Group isolate UT1345 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651040.10.0probable WRKY transcription factor 54
TrEMBLA0A0E0IB920.0A0A0E0IB92_ORYNI; Uncharacterized protein
STRINGONIVA08G13920.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-26WRKY family protein