PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G09500.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 300aa    MW: 30081.6 Da    PI: 9.0292
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G09500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012104126123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C + F ++  L  H++ H
  ONIVA08G09500.1 104 FKCNYCQRKFYTSQALGGHQNAH 126
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.22E-6101131No hitNo description
PROSITE profilePS5015711.572104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MASSSQTTVS MEVAMKVEGS GGGGGGGEEG EVVAKKEEEV AAAMELDLLG ALRAEEVMPA  60
EKGKAAVVMV GEAVAPSVEE RASAVAAAAA NGGGGGGEAR RRLFKCNYCQ RKFYTSQALG  120
GHQNAHKRER SLAKRGAAVA AAAAAAGRGL YGFGDPFVPH HLRFRSLWPY PAAAGAARTT  180
PFLGRGSAAA AAAAPAAPFY GAVHHGWSAQ PPSSLQGIAA RHAAAERPVY PADAFGYGAG  240
SSSSRATGAP ASAGLRWAEG GGSGTIHSAA AAAAGEQHTA AEVKAQEEMS SSKIDLTLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054150.0AP005415.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875762.11e-146zinc finger protein 4
TrEMBLA0A0E0I9M10.0A0A0E0I9M1_ORYNI; Uncharacterized protein
STRINGONIVA08G09500.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.16e-17zinc-finger protein 1