PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G03410.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 795aa    MW: 86580.8 Da    PI: 6.5529
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G03410.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.5e-1581125147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+ E+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  ONIVA08G03410.2  81 RERWTEAEHNRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 125
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-1675131IPR009057Homeodomain-like
PROSITE profilePS5129419.59376130IPR017930Myb domain
TIGRFAMsTIGR015571.7E-1679128IPR006447Myb domain, plants
SMARTSM007176.6E-1280128IPR001005SANT/Myb domain
PfamPF002493.1E-1281124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-881121IPR009057Homeodomain-like
CDDcd001671.45E-883126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MQLLSRRRRG RRSEAASLVG IALLALEGDG AVGHSFGGGG ARIKEVFGLR RLTAIGSIQI  60
NSSGEEAVVK VRKPYTITKQ RERWTEAEHN RFLEALKLYG RAWQRIEEHV GTKTAVQIRS  120
HAQKFFTKLE KEAINNGTSP GQAHDIDIPP PRPKRKPNSP YPRKSCLSSE TSTREVQNDK  180
ATISNMTNNS TAQMAGDAAL EKLQRKEISE KGSCSEVLNL FREVPSASFS SVNKSSSNYG  240
ASRGLEPTKT EVKDVVILER DSISNGAGKD AKDINDQEME RLNGIHISSK PDHSHENCLD  300
TSSQQFKPKS NSVETTYVDW SAAKASHYQM DRNGVTGFQA TGTEGSHPDQ TSDQMGGASG  360
TMNQCIHPTL PVDPKFDGNA AAQPFPHNYA AFAPMMQCHC NQDAYRSFAN MSSTFSSMLV  420
STLLSNPAIH AAARLAASYW PTVDGNTPDP NQENLSESAQ GSHAGSPPNM ASIVAATVAA  480
ASAWWATQGL LPLFPPPIAF PFVPAPSAPF STADVQRAQE KDIDCPMDNA QKELQETRKQ  540
DNSEAMKVIV SSETDESGKG EVSLHTELKI SPADKADTKP AAGAETSDVF GNKKKQDRSS  600
CGSNTPSSSD IEADNAPENQ EKANDKAKQA SCSNSSAGDN NHRRFRSSAS TSDSWKEVSE  660
EVVVYQHSAY SHLSYSLNIL HCFSNSHFCC QGRLAFDALF SRERLPQSFS PPQVEGSKEI  720
SKEEEDEVTT VTVDLNKNAA IIDQELDTAD EPRASFPNEL SNLKLKSRRT GFKPYKRCSV  780
EAKENRVPAS DEISA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427710.0AK242771.1 Oryza sativa Japonica Group cDNA, clone: J090053J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649844.10.0protein LHY isoform X2
RefseqXP_015649845.10.0protein LHY isoform X2
TrEMBLA0A0E0I7E70.0A0A0E0I7E7_ORYNI; Uncharacterized protein
STRINGONIVA08G03410.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.13e-40circadian clock associated 1