PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA08G01130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 345aa MW: 37392 Da PI: 10.4327 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.7 | 2e-52 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ ONIVA08G01130.1 11 VPPGFRFHPTEEELLNYYLRKKVASEQIDL-DVIRDVDLNKLEPWDIQErcKIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 103 69****************************.9***************963444443456*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + +g++ktLvfykgrap+g+k+dW+mheyrl ONIVA08G01130.1 104 IYN-AVHRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 ***.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-56 | 7 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.732 | 11 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-28 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 345 aa Download sequence Send to blast |
MSISVNGQSC VPPGFRFHPT EEELLNYYLR KKVASEQIDL DVIRDVDLNK LEPWDIQERC 60 KIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYNAVHR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD DPATDTAAAT PTVTSAAAAA AAMAAAADGG QEDGWVVCRV 180 FKKKHHHKEA GGGGGKHGGD GSAGAKAAHA YSSSDDALDQ ILQYMGRSCK QEHELPSPQA 240 SGGGGAGAGS RPASRYLRPI DTVLGGHGFM KLPPLARPTT SSASTPPTTT ASPTTPPPPR 300 GCSVVPTPAP TTTCGASRGR LRRHRRRRRR RRPRQSVSAT WHCNT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-46 | 8 | 184 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-46 | 8 | 184 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-46 | 8 | 184 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-46 | 8 | 184 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-46 | 8 | 184 | 14 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-46 | 8 | 184 | 14 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 319 | 331 | RLRRHRRRRRRRR |
2 | 321 | 329 | RRHRRRRRR |
3 | 322 | 331 | RHRRRRRRRR |
4 | 322 | 333 | RHRRRRRRRRPR |
5 | 324 | 331 | RRRRRRRR |
6 | 325 | 331 | RRRRRRR |
7 | 326 | 333 | RRRRRRPR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JN634071 | 0.0 | JN634071.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648974.1 | 1e-163 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-111 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A0E0I6L0 | 0.0 | A0A0E0I6L0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G01130.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46770.1 | 3e-88 | NAC family protein |