PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G26140.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 333aa    MW: 34936.7 Da    PI: 6.7806
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G26140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.31.6e-23122183259
                      --SS-EEEEEEE--TT-S.S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgse.fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg +WrKYGqK++++s+ +prsYYrCt++   gC+++k+v++s+++ + ++i Y geH+++
  ONIVA07G26140.1 122 EDGRQWRKYGQKHIQDSPnNPRSYYRCTHRpdqGCMATKQVQTSESNSSEFVISYYGEHTCR 183
                      89**************9736*********9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-25107185IPR003657WRKY domain
SuperFamilySSF1182906.54E-23114185IPR003657WRKY domain
PROSITE profilePS5081120.346116185IPR003657WRKY domain
SMARTSM007743.4E-34121184IPR003657WRKY domain
PfamPF031067.6E-23122183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MASPDGGVGD GGAEPHEVMD DLLEMREQAA MLHSMLHGTS PSSCAAAAST RQLNQLIDGV  60
MSRLQSSSLS VMSPGGGGGR RGSGGRKKKG TKAVAGPHRR SSSGRRRSKS PFVRMVTTKE  120
LEDGRQWRKY GQKHIQDSPN NPRSYYRCTH RPDQGCMATK QVQTSESNSS EFVISYYGEH  180
TCRDPSTIPF VVEAEAPAAD YANLISFGSS GGASTSRVDP LRQSRHRLMA EAVDPTPSCS  240
FANCHSPVLS SECASEAAAL SSSLPLSAVV GSAVTTPSTS IVGSAPADYD WPSGLAGGDM  300
AGSFPSSPSS LGFMTGSFGN LPGDDDDMFG FDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20116183369OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109000.0AK110900.1 Oryza sativa Japonica Group cDNA clone:002-173-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646872.10.0probable WRKY transcription factor 70
RefseqXP_015646873.10.0probable WRKY transcription factor 70
TrEMBLA0A0E0I5R10.0A0A0E0I5R1_ORYNI; Uncharacterized protein
STRINGONIVA07G26140.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-19WRKY DNA-binding protein 46