PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA07G23980.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 571aa MW: 60484 Da PI: 5.2629

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G23980.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.4	4.2e-15	114	174	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e a+lk+++ ONIVA07G23980.1 114 EAKRRARLVRNRESAHQSRQRKKQYVEELEGKVKVMQATIADLTARISCVTAENAALKQQL 174 78********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.5E-14	112	176	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-13	114	174	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.484	114	177	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.44E-13	116	174	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.9E-17	116	175	No hit	No description
CDD	cd14704	6.91E-22	117	168	No hit	No description
PROSITE pattern	PS00036	0	120	134	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MAEPDLLAPF ADLPFPPGDD FPDFPTLGDD AFALEDFDLD DLDLDFDVDL FPPDAPPPVT 60 TSSSSSAAGS PEAGTSSAGD GGSKNEESAD SSSPSRSESD GGGGGSGKDG KDDEAKRRAR 120 LVRNRESAHQ SRQRKKQYVE ELEGKVKVMQ ATIADLTARI SCVTAENAAL KQQLSGTAGA 180 DAAAPPPPMP MYPAVYPLPM PWIHPAYAMR GSQVPLVPIP RLKTQLPAST PEPPAKKARK 240 TKKVAGVSLL GLLFLMMVCG CLVPAVNRMY GAAYTGEGAA IVPSHHGRIL AVEGPQNSVS 300 NGVDPKVPQN GSETLPALLY LPRNGKHVKI NGNLVIKSIV ASEKASSRLS NYGGKGSGNQ 360 EKEETSLAIP GYVAPLEAGE VMDSAKGMNE LMALAPGDGS IYREDDGMLP QWFSEAMSGP 420 MLNSGMCTEV FQFDLSPTTA DANGIVPVYS GSVTNTSQNY TENLPSGPVQ KVKNRRISYS 480 EAIPLRGSIS NDTDHFKAPP KNHSQSHAGR KPVSSVVVSV LADPREESDR DGEGRISSNS 540 LSRIFVVVLI DSVKYVTYSC VLPFKSHSPH L

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MAEPDLLAPF ADLPFPPGDD FPDFPTLGDD AFALEDFDLD DLDLDFDVDL FPPDAPPPVT  60
TSSSSSAAGS PEAGTSSAGD GGSKNEESAD SSSPSRSESD GGGGGSGKDG KDDEAKRRAR  120
LVRNRESAHQ SRQRKKQYVE ELEGKVKVMQ ATIADLTARI SCVTAENAAL KQQLSGTAGA  180
DAAAPPPPMP MYPAVYPLPM PWIHPAYAMR GSQVPLVPIP RLKTQLPAST PEPPAKKARK  240
TKKVAGVSLL GLLFLMMVCG CLVPAVNRMY GAAYTGEGAA IVPSHHGRIL AVEGPQNSVS  300
NGVDPKVPQN GSETLPALLY LPRNGKHVKI NGNLVIKSIV ASEKASSRLS NYGGKGSGNQ  360
EKEETSLAIP GYVAPLEAGE VMDSAKGMNE LMALAPGDGS IYREDDGMLP QWFSEAMSGP  420
MLNSGMCTEV FQFDLSPTTA DANGIVPVYS GSVTNTSQNY TENLPSGPVQ KVKNRRISYS  480
EAIPLRGSIS NDTDHFKAPP KNHSQSHAGR KPVSSVVVSV LADPREESDR DGEGRISSNS  540
LSRIFVVVLI DSVKYVTYSC VLPFKSHSPH L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121898	0.0	AK121898.1 Oryza sativa Japonica Group cDNA clone:J033105F09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647746.1	0.0	bZIP transcription factor 60
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	A0A0E0I4U4	0.0	A0A0E0I4U4_ORYNI; Uncharacterized protein
STRING	ONIVA07G23980.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	3e-77	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]