PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G18840.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 598aa    MW: 64168.8 Da    PI: 5.6196
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G18840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.13e-961895972374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                       +lLlecA+ v+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ +++++ s +++  + l f+e+sP+  f+
  ONIVA07G18840.1 189 SQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGQRTLRTLAAASDRNT-SFDSTRRTALrFQELSPWSSFG 281
                      589************************************************************99888744.44444444446*********** PP

             GRAS  95 hltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgv 174
                      h++aN aIle++ +         +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r++kfA+ +gv
  ONIVA07G18840.1 282 HVAANGAILESFLEVaaaassetQRFHILDLSNTFCTQWPTLLEALATRSaDETPHLSITTVVSAAPSaptaaVQRVMREIGQRMEKFARLMGV 375
                      **********8754434455567999************************8889**********988889999999****************** PP

             GRAS 175 pfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse............ 251
                      pf+f++++++ +l++l+l++L++++     alaVn+v +l  ++  ++  + +rd++   +++l P+vv+vve+ead+   +            
  ONIVA07G18840.1 376 PFRFRAVHHSgDLAELDLDALDLREggaTTALAVNCVNSLRGVV--PGRAR-RRDAFAASLRRLDPRVVTVVEEEADLvA-Sdpdassateegg 465
                      *******8888**************888889************9..55555.59***********************954.44899******** PP

             GRAS 252 ....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                           Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et+++W +r+++aGF+pv++se++a+++++ll
  ONIVA07G18840.1 466 dteaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLL 558
                      *****************************************.**************************************************** PP

             GRAS 342 rkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                      r++  +g+++ e         + ++l Wk++pLv++SaWr
  ONIVA07G18840.1 559 RRYR-EGWSMREAgtddsaaGAGVFLAWKEQPLVWASAWR 597
                      ****.88888866666666455566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.466162571IPR005202Transcription factor GRAS
PfamPF035141.0E-93189597IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MDTLFRLVSL QAASEQQQSA SYNSRSTTSS GSRSSSHQTN ASYSYYHHSS NSGGGGGGGG  60
GYYYGGQQPP PSQYYYLEPY QEECGNAPHH QLYMDEDFSS SSSSRHFHHG APVQQQQPPA  120
SSTPTGTAPT PPLSTSSTAA GAGHGLFEAA DLSFPPDLNL DFSSPASSSG GGTASSGAVG  180
GGGGGRWASQ LLLECARSVA ARDSQRVQQL MWMLNELASP YGDVEQKLAS YFLQGLFARL  240
TASGQRTLRT LAAASDRNTS FDSTRRTALR FQELSPWSSF GHVAANGAIL ESFLEVAAAA  300
SSETQRFHIL DLSNTFCTQW PTLLEALATR SADETPHLSI TTVVSAAPSA PTAAVQRVMR  360
EIGQRMEKFA RLMGVPFRFR AVHHSGDLAE LDLDALDLRE GGATTALAVN CVNSLRGVVP  420
GRARRRDAFA ASLRRLDPRV VTVVEEEADL VASDPDASSA TEEGGDTEAA FLKVFGEGLR  480
FFSAYMDSLE ESFPKTSNER LALERGAGRA IVDLVSCPAS ESMERRETAA SWARRMRSAG  540
FSPVAFSEDV ADDVRSLLRR YREGWSMREA GTDDSAAGAG VFLAWKEQPL VWASAWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-16018359882474Protein SHORT-ROOT
5b3h_B1e-16118359828420Protein SHORT-ROOT
5b3h_E1e-16118359828420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645491.10.0protein SHORT-ROOT 1
SwissprotA2YN560.0SHR1_ORYSI; Protein SHORT-ROOT 1
TrEMBLA0A0E0I2Z50.0A0A0E0I2Z5_ORYNI; Uncharacterized protein
STRINGONIVA07G18840.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-145GRAS family protein