PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G11310.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 304aa    MW: 32347.3 Da    PI: 5.4272
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G11310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY825.9e-26130187258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                      dD y WrKYGqK++ g++f+rsYYrC++  gC+++k+v++s++dp+ +eitY g H++
  ONIVA07G11310.1 130 DDSYLWRKYGQKDILGARFARSYYRCAQMlGCTARKQVQQSDDDPSRLEITYIGLHTC 187
                      8**************************999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.31E-23124188IPR003657WRKY domain
PROSITE profilePS5081119.6124185IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-24127187IPR003657WRKY domain
SMARTSM007742.6E-33129189IPR003657WRKY domain
PfamPF031064.8E-24130187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MASGAGGGTV ATERLIRSAQ KSTNQLKALL AGGGGGGGRS SGAVEVILAD ISDSLSQALA  60
SLMLRAACDD QSLPAAAAPP PPPEASLLPS YGQCVVANSG GRSVSKRKAQ RRSRADGSSR  120
RIILELGDRD DSYLWRKYGQ KDILGARFAR SYYRCAQMLG CTARKQVQQS DDDPSRLEIT  180
YIGLHTCGGD RPSSPAPTNP ADGPRCDAAT SSHRLLPSAL QQKLEEHVPA ASDDMMMACT  240
PSWLFIPSPA CSQSELLSEG EVPELRVVRQ EPYDPVELVE EHKKPSDADE DSLALHDSVV  300
PDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-161281981580Disease resistance protein RRS1
5w3x_D6e-161281981580Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052560.0AP005256.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0038F09.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645532.11e-137uncharacterized protein LOC107278742 isoform X1
TrEMBLA0A0E0I0690.0A0A0E0I069_ORYNI; Uncharacterized protein
STRINGONIVA07G11310.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-21WRKY DNA-binding protein 55