PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G07180.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 431aa    MW: 48124.8 Da    PI: 9.2141
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G07180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.91.9e-29116205190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      +fY+ YA ++GFsvr+++ +ks+++geit+r+fvCs+eg+++++k++ +++r++++ trtgC+a+l++++++ ++k+ev+ +e +HnH+l+
  ONIVA07G07180.1 116 EFYRYYAWKLGFSVRREYANKSRKTGEITSRKFVCSREGFKAPDKRT-NHTRTPQPDTRTGCHANLVIRRKNdTSKYEVYAFEAQHNHPLF 205
                      6*******************************************999.**********************9999***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-26116205IPR004330FAR1 DNA binding domain
PROSITE profilePS508118.754131205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGLPDTAHLQ VSNLVAAAAT EGKKKDTRRQ QESTSPRRAA PPVAAGDELA LAGATPQPYT  60
CPSSSSARSL RWKESTGNTA VEDSEAGPCI PRVQAATGDY TPWLGQEFAS EHEAYEFYRY  120
YAWKLGFSVR REYANKSRKT GEITSRKFVC SREGFKAPDK RTNHTRTPQP DTRTGCHANL  180
VIRRKNDTSK YEVYAFEAQH NHPLFIPSCA NPLQRKLSDV QSSDADNSGS EFKACINDYE  240
EEVELFTAWE AMISKYNLHS NRRKKKGRNA KSQRKSCIEK GLQKTKKVQP EQSPIQYTML  300
DATQPGNVLF QGLDISNPFP MGQLNYGGVQ PQPGLCPSLP TVSRELGFAA YLSQPSSNSQ  360
HNQQKSTALL KVIVHICFNL QYNSWDKTGP VEDQINFSNS YQSVIEATKN SHLPGYIHQQ  420
HVHAMLRSTT S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627310.11e-103protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_015627311.11e-103protein FAR1-RELATED SEQUENCE 7 isoform X2
TrEMBLA0A0E0HYL20.0A0A0E0HYL2_ORYNI; Uncharacterized protein
STRINGONIVA07G07180.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15895914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-21FAR1 family protein