PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G04110.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 407aa    MW: 44524.6 Da    PI: 4.7753
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G04110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.21.3e-12124224197
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr 87 
                      f+k+l+ sd   + r++ p   a+       + k  ++  l ++d++g  +++ +   +k++r++l+k Wk+F ++ +  +gD+v+F+  +d++
  ONIVA07G04110.1 124 FVKTLMISDFDFRIRFSAPMADAKGVfpplvDAKAVQP--LLVKDLHGSPMTFDY--GRKGKRVTLAKVWKKFRDDMDFVDGDSVIFMrrRDDD 213
                      899********************888**9986666676..999************..*******************************665566 PP

                      .SEE..EEEEE CS
               B3  88 .sefelvvkvf 97 
                       +++el+v+v+
  ONIVA07G04110.1 214 dDDGELYVGVR 224
                      79999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.29E-13119232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-13119233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-8122206No hitNo description
PfamPF023621.6E-9124224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAAAAAPLAD DGDGIVDRAM WLACAAPNSG RLPAVGSVVF YFVDGHAAQF CQFPAPLLEQ  60
LAVPGPRVFL CTVAAVRLRA DALTNEAYAE ITLDPVADHD VPRLAPAPAP APAAAAGGQQ  120
LRYFVKTLMI SDFDFRIRFS APMADAKGVF PPLVDAKAVQ PLLVKDLHGS PMTFDYGRKG  180
KRVTLAKVWK KFRDDMDFVD GDSVIFMRRR DDDDDDGELY VGVRCQRTLE RPLRNTMRRY  240
RPPTPPQAAV QEAVLAAAGH AAAGERFTVA YRSRQDGDEF VVPREAVEEG LRARLTSLAE  300
VEFVWAVEDG APPIVGPRGK VTAIATGQLW RNLEIVWDGN SEMDMSANFW QVRPVEEVDI  360
SPSTPPPKRL KNCEIDDTAS TSVSVDNGDE QVPTMRQRLE ALIPDNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A4e-2813381336Auxin response factor 1
4ldy_B4e-2813381336Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646610.0AK064661.1 Oryza sativa Japonica Group cDNA clone:002-115-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646443.10.0B3 domain-containing protein Os07g0183200
SwissprotQ8H5070.0Y7832_ORYSJ; B3 domain-containing protein Os07g0183200
TrEMBLA0A0E0HXH00.0A0A0E0HXH0_ORYNI; Uncharacterized protein
STRINGONIVA07G04110.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157921114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-28auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]