PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G28020.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 447aa    MW: 47356.7 Da    PI: 6.9096
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G28020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.6e-172875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+llvd v+++G g+W+++ r+ g+ R++k+c++rw ++l
  ONIVA06G28020.1 28 KGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 75
                     79******************************************9986 PP
2Myb_DNA-binding44.73.1e-1481124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E+ l+++++ +lG++ W++I++++  gRt++++k++w++
  ONIVA06G28020.1  81 KGPFSPDEERLILRLHGLLGNK-WARISSYLH-GRTDNEIKNYWNT 124
                      79********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0752375IPR017930Myb domain
SuperFamilySSF466894.12E-3025122IPR009057Homeodomain-like
SMARTSM007171.6E-132777IPR001005SANT/Myb domain
PfamPF002497.4E-152875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-222982IPR009057Homeodomain-like
CDDcd001671.50E-113075No hitNo description
PROSITE patternPS0017504352IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129424.66376130IPR017930Myb domain
SMARTSM007171.7E-1480128IPR001005SANT/Myb domain
PfamPF002491.3E-1381124IPR001005SANT/Myb domain
CDDcd001674.15E-1083126No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2383130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MARSGGGNGG GEGGGGGGNG GGGGGLKKGP WTQAEDKLLV DHVRRHGEGN WNAVRRETGL  60
QRCGKSCRLR WANHLRPDLR KGPFSPDEER LILRLHGLLG NKWARISSYL HGRTDNEIKN  120
YWNTRLKRRV RAGLTPYPPE IEREIAHLRA QNLNLSAEGG GGGMLPPPLL LDPSNPFALQ  180
QAPVVAPSPS ASQANSPPLI NQNYPLLNQM QGLQLLHLAN HQQAPPPQQQ QQQQPAFHHH  240
HDGGGGGGFV SSGLPPLPNR PRELPSNQFE TATSGGGGGG GCDALLESLL LGDDHVLPRP  300
NPAMLRVGSM PELMYREPSS SHVLHGGGGG GGASDSDVTS QYPPGEEDPH YGGRWDFIFE  360
DVKPKRKAAS AVEEISGMFG IAPGSIPGEW FNPGGVGSAA AAAGGSSAPS PGPSSVVTTD  420
DDFTLEMQQI MSSLPLLQPE EHHNWNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28261305108B-MYB
1h8a_C2e-282613025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130RLKRRVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116970.0AK111697.1 Oryza sativa Japonica Group cDNA clone:J023004F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641592.10.0uncharacterized protein LOC4341850
TrEMBLA0A0E0HUK80.0A0A0E0HUK8_ORYNI; Uncharacterized protein
STRINGONIVA06G28020.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.24e-57myb domain protein 101