PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G24780.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 460aa    MW: 50688.8 Da    PI: 9.0508
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G24780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.42.8e-12158186533
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                      k  rr+++NReAAr+sR+RKka+i++Le+
  ONIVA06G24780.1 158 KTLRRLAQNREAARKSRLRKKAYIQQLET 186
                      7789***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-5154226IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.5E-9154198No hitNo description
PROSITE profilePS502178.565156185IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.56E-7158188No hitNo description
PfamPF001702.5E-9158186IPR004827Basic-leucine zipper domain
PROSITE patternPS000360161176IPR004827Basic-leucine zipper domain
PfamPF141441.2E-25235309IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MQLKCSERLV SLKASVLHTV DDTMWLKLHR RRNPEGYDMP SDLDQALLLY FDGQEQDKPS  60
TQEEPHKPLN FVKETLNIFP SQPMDGEPTP TPKASMSAPP IAGFSRRSPA PAAADGRPLT  120
LGKTSKAAFK KEGGSGSGGA MAASASSELM GPKTPDPKTL RRLAQNREAA RKSRLRKKAY  180
IQQLETGRIR LAHLEQEIQF TRAQGAFCGA GILSPDAALF NLEYERWQEA HHQVISRLRA  240
AVEEHRPDGE LQPHVDEAMS HYGVLMAHKA RLVGADPLHL LSGLWKGAVE QCFLWIGGFR  300
PSELIKVVVR HVEPLTEQQL AAVYSAQQAA RQEEDALDGG LQALLRSLSD VVSSSDAPSS  360
SQQTPPVMYH PSAAAAMAAA SFMGQYGSYS NLQLAMDKLA NLAIFLRQAD EERMRTLHAL  420
RRMLTVRQAA RCFVAVDDYF GRLRALALFW TTTRPHPAAG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1199090.0AK119909.1 Oryza sativa Japonica Group cDNA clone:002-183-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643999.10.0transcription factor TGAL8 isoform X1
SwissprotQ69T210.0TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBLA0A0E0HTG70.0A0A0E0HTG7_ORYNI; Uncharacterized protein
STRINGONIVA06G24780.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129722126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-93bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]